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Kdm3b lysine demethylase 3B [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113191515, updated on 15-Mar-2024

Summary

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Gene symbol
Kdm3b
Gene description
lysine demethylase 3B
See related
Ensembl:ENSUPAG00010022021
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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See Kdm3b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540129.1 (1222667..1301219)

NW_020540129.1Genomic Context describing neighboring genes Neighboring gene oocyte-specific histone RNA stem-loop-binding protein 2-like Neighboring gene family with sequence similarity 53 member C Neighboring gene receptor accessory protein 2 Neighboring gene early growth response 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020540129 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 3B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020540129.1 Reference ASM342692v1

    Range
    1222667..1301219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026401288.1 → XP_026257073.1  lysine-specific demethylase 3B isoform X1

    UniProtKB/TrEMBL
    A0A8D2KNY3, A0A8D2KPB2
    Related
    ENSUPAP00010027885.1, ENSUPAT00010031736.1
    Conserved Domains (2) summary
    smart00558
    Location:1502 → 1574
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1599 → 1704
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_026401290.1 → XP_026257075.1  lysine-specific demethylase 3B isoform X3

    UniProtKB/TrEMBL
    A0A8D2IGM0, A0A8D2KPB2
    Related
    ENSUPAP00010027890.1, ENSUPAT00010031741.1
    Conserved Domains (2) summary
    smart00558
    Location:1302 → 1374
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1399 → 1504
    cupin_like; Conserved domain found in cupin and related proteins

  3. XM_026401289.1 → XP_026257074.1  lysine-specific demethylase 3B isoform X2

    UniProtKB/TrEMBL
    A0A8D2KPB2
    Related
    ENSUPAP00010027874.1, ENSUPAT00010031725.1
    Conserved Domains (2) summary
    smart00558
    Location:1502 → 1574
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1599 → 1704
    cupin_like; Conserved domain found in cupin and related proteins

  4. XM_026401291.1 → XP_026257076.1  lysine-specific demethylase 3B isoform X4

    UniProtKB/TrEMBL
    A0A8D2KPB2
    Conserved Domains (2) summary
    smart00558
    Location:1274 → 1346
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1371 → 1476
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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