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Sf3b1 splicing factor 3b subunit 1 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113190173, updated on 15-Mar-2024

Summary

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Gene symbol
Sf3b1
Gene description
splicing factor 3b subunit 1
See related
Ensembl:ENSUPAG00010015518
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540098.1 (216531..266864, complement)

NW_020540098.1Genomic Context describing neighboring genes Neighboring gene coenzyme Q10B Neighboring gene heat shock protein family D (Hsp60) member 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020540098 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020540098.1 Reference ASM342692v1

    Range
    216531..266864 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026399339.1 → XP_026255124.1  splicing factor 3B subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D2HUU5
    Related
    ENSUPAP00010019597.1, ENSUPAT00010022294.1
    Conserved Domains (4) summary
    smart01104
    Location:241 → 382
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    COG5181
    Location:446 → 1304
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    sd00044
    Location:850 → 874
    HEAT; HEAT repeat [structural motif]
    pfam08920
    Location:332 → 442
    SF3b1; Splicing factor 3B subunit 1

  2. XM_026399341.1 → XP_026255126.1  splicing factor 3B subunit 1 isoform X2

    Conserved Domains (4) summary
    smart01104
    Location:95 → 236
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    COG5181
    Location:300 → 1158
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    sd00044
    Location:704 → 728
    HEAT; HEAT repeat [structural motif]
    pfam08920
    Location:186 → 296
    SF3b1; Splicing factor 3B subunit 1

RNA

  1. XR_003301749.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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