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Fgd6 FYVE, RhoGEF and PH domain containing 6 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113188984, updated on 15-Mar-2024

Summary

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Gene symbol
Fgd6
Gene description
FYVE, RhoGEF and PH domain containing 6
See related
Ensembl:ENSUPAG00010006610
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020539894.1 (11509406..11632318)

NW_020539894.1Genomic Context describing neighboring genes Neighboring gene methionyl aminopeptidase 2 Neighboring gene vezatin, adherens junctions transmembrane protein Neighboring gene nuclear receptor subfamily 2 group C member 1 Neighboring gene serine/threonine-protein kinase VRK2-like Neighboring gene NADH:ubiquinone oxidoreductase subunit A12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020539894 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
FYVE, RhoGEF and PH domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020539894.1 Reference ASM342692v1

    Range
    11509406..11632318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026397582.1 → XP_026253367.1  FYVE, RhoGEF and PH domain-containing protein 6

    UniProtKB/TrEMBL
    A0A8D2H636
    Related
    ENSUPAP00010008388.1, ENSUPAT00010009611.1
    Conserved Domains (4) summary
    cd13237
    Location:1334 → 1422
    PH2_FGD5_FGD6; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6 pleckstrin homology (PH) domain, C-terminus
    cd15743
    Location:1215 → 1275
    FYVE_FGD6; FYVE domain found in FYVE, RhoGEF and PH domain-containing protein 6 (FGD6) and similar proteins
    pfam00621
    Location:873 → 1056
    RhoGEF; RhoGEF domain
    cl17171
    Location:1075 → 1197
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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