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Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif 1 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113188034, updated on 15-Mar-2024

Summary

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Gene symbol
Adamts1
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif 1
See related
Ensembl:ENSUPAG00010003416
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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See Adamts1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540055.1 (3118835..3130529)

NW_020540055.1Genomic Context describing neighboring genes Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4-like Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 5 Neighboring gene cysteine and tyrosine rich 1 Neighboring gene RNA polymerase II subunit A C-terminal domain phosphatase SSU72 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020540055 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020540055.1 Reference ASM342692v1

    Range
    3118835..3130529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026396175.1 → XP_026251960.1  A disintegrin and metalloproteinase with thrombospondin motifs 1

    UniProtKB/TrEMBL
    A0A8D2KCW8
    Related
    ENSUPAP00010004178.1, ENSUPAT00010004810.1
    Conserved Domains (5) summary
    smart00209
    Location:569 → 613
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:256 → 461
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01562
    Location:61 → 171
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:723 → 840
    ADAM_spacer1; ADAM-TS Spacer 1
    cl15456
    Location:466 → 547
    ADAM_CR; ADAM cysteine-rich
Nucleotide Protein
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