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Brd2 bromodomain containing 2 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113179036, updated on 15-Mar-2024

Summary

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Gene symbol
Brd2
Gene description
bromodomain containing 2
See related
Ensembl:ENSUPAG00010005033
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020539913.1 (97133..108857)

NW_020539913.1Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DM beta chain Neighboring gene HLA class II histocompatibility antigen, DM alpha chain Neighboring gene HLA class II histocompatibility antigen, DO alpha chain Neighboring gene HLA class II histocompatibility antigen, DP alpha 1 chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020539913 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysine-acetylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bromodomain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020539913.1 Reference ASM342692v1

    Range
    97133..108857
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026383392.1 → XP_026239177.1  bromodomain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D2H4P3
    Conserved Domains (4) summary
    cd05497
    Location:73 → 179
    Bromo_Brdt_I_like; Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
    cd05498
    Location:348 → 449
    Bromo_Brdt_II_like; Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
    pfam17035
    Location:642 → 704
    BET; Bromodomain extra-terminal - transcription regulation
    cl26464
    Location:215 → 332
    Atrophin-1; Atrophin-1 family

  2. XM_026383395.1 → XP_026239180.1  bromodomain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D2H4P3
    Conserved Domains (4) summary
    cd05497
    Location:73 → 179
    Bromo_Brdt_I_like; Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
    cd05498
    Location:348 → 449
    Bromo_Brdt_II_like; Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
    pfam17035
    Location:642 → 704
    BET; Bromodomain extra-terminal - transcription regulation
    cl26464
    Location:215 → 332
    Atrophin-1; Atrophin-1 family

  3. XM_026383393.1 → XP_026239178.1  bromodomain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D2H4P3
    Conserved Domains (4) summary
    cd05497
    Location:73 → 179
    Bromo_Brdt_I_like; Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
    cd05498
    Location:348 → 449
    Bromo_Brdt_II_like; Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
    pfam17035
    Location:642 → 704
    BET; Bromodomain extra-terminal - transcription regulation
    cl26464
    Location:215 → 332
    Atrophin-1; Atrophin-1 family

  4. XM_026383394.1 → XP_026239179.1  bromodomain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D2H4P3
    Related
    ENSUPAP00010006278.1, ENSUPAT00010007180.1
    Conserved Domains (4) summary
    cd05497
    Location:73 → 179
    Bromo_Brdt_I_like; Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
    cd05498
    Location:348 → 449
    Bromo_Brdt_II_like; Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
    pfam17035
    Location:642 → 704
    BET; Bromodomain extra-terminal - transcription regulation
    cl26464
    Location:215 → 332
    Atrophin-1; Atrophin-1 family

  5. XM_026383391.1 → XP_026239176.1  bromodomain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D2H4P3
    Conserved Domains (4) summary
    cd05497
    Location:73 → 179
    Bromo_Brdt_I_like; Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
    cd05498
    Location:348 → 449
    Bromo_Brdt_II_like; Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
    pfam17035
    Location:642 → 704
    BET; Bromodomain extra-terminal - transcription regulation
    cl26464
    Location:215 → 332
    Atrophin-1; Atrophin-1 family

  6. XM_026383396.1 → XP_026239181.1  bromodomain-containing protein 2 isoform X2

    Conserved Domains (4) summary
    cd05498
    Location:229 → 330
    Bromo_Brdt_II_like; Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
    pfam17035
    Location:523 → 585
    BET; Bromodomain extra-terminal - transcription regulation
    cl02556
    Location:1 → 60
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
    cl26464
    Location:96 → 213
    Atrophin-1; Atrophin-1 family

  7. XM_026383397.1 → XP_026239182.1  bromodomain-containing protein 2 isoform X2

    Conserved Domains (4) summary
    cd05498
    Location:229 → 330
    Bromo_Brdt_II_like; Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
    pfam17035
    Location:523 → 585
    BET; Bromodomain extra-terminal - transcription regulation
    cl02556
    Location:1 → 60
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
    cl26464
    Location:96 → 213
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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