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xab2 XPA binding protein 2 [ Anabas testudineus (climbing perch) ]

Gene ID: 113162801, updated on 15-Mar-2024

Summary

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Gene symbol
xab2
Gene description
XPA binding protein 2
See related
Ensembl:ENSATEG00000021587
Gene type
protein coding
RefSeq status
MODEL
Organism
Anabas testudineus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Anabantidae; Anabas
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
19
Annotation release Status Assembly Chr Location
101 current fAnaTes1.2 (GCF_900324465.2) 8 NC_046617.1 (11343276..11350834, complement)
100 previous assembly fAnaTes1.1 (GCF_900324465.1) Unplaced Scaffold NW_020535982.1 (11343276..11350725, complement)

Chromosome 8 - NC_046617.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 5, group A, member 5 Neighboring gene calmodulin regulated spectrin-associated protein family, member 3 Neighboring gene myosin heavy chain, fast skeletal muscle-like Neighboring gene myosin heavy chain, fast skeletal muscle-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in generation of catalytic spliceosome for first transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor SYF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anabas testudineus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAnaTes1.2 Primary Assembly

Genomic

  1. NC_046617.1 Reference fAnaTes1.2 Primary Assembly

    Range
    11343276..11350834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026361011.2 → XP_026216796.1  pre-mRNA-splicing factor SYF1

    UniProtKB/TrEMBL
    A0A7N6AUX6
    Related
    ENSATEP00000053495.1, ENSATET00000045633.1
Nucleotide Protein
Heading Accession and Version

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