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rnf4 ring finger protein 4 [ Anabas testudineus (climbing perch) ]

Gene ID: 113151397, updated on 15-Mar-2024

Summary

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Gene symbol
rnf4
Gene description
ring finger protein 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Anabas testudineus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Anabantidae; Anabas
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
101 current fAnaTes1.2 (GCF_900324465.2) 9 NC_046618.1 (28436528..28439025, complement)
100 previous assembly fAnaTes1.1 (GCF_900324465.1) Unplaced Scaffold NW_020536017.1 (28436528..28439025, complement)

Chromosome 9 - NC_046618.1Genomic Context describing neighboring genes Neighboring gene MRN complex interacting protein Neighboring gene sequestosome 1 Neighboring gene probable pancreatic secretory proteinase inhibitor Neighboring gene RNA polymerase II subunit B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anabas testudineus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAnaTes1.2 Primary Assembly

Genomic

  1. NC_046618.1 Reference fAnaTes1.2 Primary Assembly

    Range
    28436528..28439025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026344373.1 → XP_026200158.1  E3 ubiquitin-protein ligase RNF4 isoform X1

    UniProtKB/TrEMBL
    A0A7N6BSM7
    Conserved Domains (1) summary
    cd16533
    Location:144 → 197
    RING-HC_RNF4; RING finger, HC subclass, found in RING finger protein 4 (RNF4) and similar proteins

  2. XM_026344374.1 → XP_026200159.1  E3 ubiquitin-protein ligase RNF4 isoform X2

    UniProtKB/TrEMBL
    A0A7N6BSM7
    Conserved Domains (2) summary
    COG5574
    Location:77 → 195
    PEX10; RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
    cd16533
    Location:139 → 192
    RING-HC_RNF4; RING finger, HC subclass, found in RING finger protein 4 (RNF4) and similar proteins
Nucleotide Protein
Heading Accession and Version

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