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smoc1 SPARC related modular calcium binding 1 [ Anabas testudineus (climbing perch) ]

Gene ID: 113148715, updated on 15-Mar-2024

Summary

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Gene symbol
smoc1
Gene description
SPARC related modular calcium binding 1
See related
Ensembl:ENSATEG00000020550
Gene type
protein coding
RefSeq status
MODEL
Organism
Anabas testudineus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Anabantidae; Anabas
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 22
Exon count:
15
Annotation release Status Assembly Chr Location
101 current fAnaTes1.2 (GCF_900324465.2) 22 NC_046630.1 (4271997..4310924, complement)
100 previous assembly fAnaTes1.1 (GCF_900324465.1) Unplaced Scaffold NW_020536012.1 (4271997..4310925, complement)

Chromosome 22 - NC_046630.1Genomic Context describing neighboring genes Neighboring gene T cell receptor beta variable 29-1-like Neighboring gene solute carrier family 2, facilitated glucose transporter member 1 Neighboring gene coiled-coil domain containing 177 Neighboring gene pleckstrin homology domain containing, family D (with coiled-coil domains) member 1 Neighboring gene solute carrier family 39 member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SPARC-related modular calcium-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anabas testudineus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAnaTes1.2 Primary Assembly

Genomic

  1. NC_046630.1 Reference fAnaTes1.2 Primary Assembly

    Range
    4271997..4310924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026340505.2 → XP_026196290.1  SPARC-related modular calcium-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A7N6B304

  2. XM_026340504.2 → XP_026196289.1  SPARC-related modular calcium-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A7N6B304, A0A7N6BN53
    Related
    ENSATEP00000066309.1, ENSATET00000061895.1

  3. XM_026340503.2 → XP_026196288.1  SPARC-related modular calcium-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A7N6B304

  4. XM_026340506.2 → XP_026196291.1  SPARC-related modular calcium-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q1JGI7, A0A7N6B304
    Related
    ENSATEP00000029768.2, ENSATET00000030219.2
Nucleotide Protein
Heading Accession and Version

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