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cd4-1 CD4-1 molecule [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113136575, updated on 15-Mar-2024

Summary

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Gene symbol
cd4-1
Gene description
CD4-1 molecule
See related
Ensembl:ENSMAMG00000003457
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Also known as
cd4
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 16
Exon count:
11
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 16 NC_046648.1 (17474850..17492177)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535911.1 (3886381..3903708)

Chromosome 16 - NC_046648.1Genomic Context describing neighboring genes Neighboring gene prolyl 3-hydroxylase 3 Neighboring gene ubiquitin specific peptidase 5 (isopeptidase T) Neighboring gene CD4-2 molecule, tandem duplicate 2 Neighboring gene perlucin-like protein Neighboring gene C-type lectin domain family 4 member E-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC class II protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in interleukin-15-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-cell surface glycoprotein CD4
Names
CD4 molecule

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046648.1 Reference fMasArm1.2 Primary Assembly

    Range
    17474850..17492177
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026317511.1 → XP_026173296.1  T-cell surface glycoprotein CD4

    UniProtKB/TrEMBL
    A0A3Q3KUM5, A0A7N9AM95
    Related
    ENSMAMP00000005133.1, ENSMAMT00000005267.2
    Conserved Domains (2) summary
    smart00410
    Location:142 → 208
    IG_like; Immunoglobulin like
    cl11960
    Location:339 → 408
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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