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samd8 sterile alpha motif domain containing 8 [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113135288, updated on 14-Dec-2023

Summary

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Gene symbol
samd8
Gene description
sterile alpha motif domain containing 8
See related
Ensembl:ENSMAMG00000016937
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
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Genomic context

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Location:
chromosome: 19
Exon count:
8
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 19 NC_046651.1 (13115686..13123866)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535908.1 (13115698..13123866)

Chromosome 19 - NC_046651.1Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase DUPD1-like Neighboring gene dual specificity phosphatase DUPD1-like Neighboring gene dual specificity protein phosphatase 13-like Neighboring gene dual specificity phosphatase 13 Neighboring gene voltage-dependent anion-selective channel protein 2-like Neighboring gene catechol-O-methyltransferase domain containing 1 Neighboring gene zinc finger protein 503-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin synthase-related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046651.1 Reference fMasArm1.2 Primary Assembly

    Range
    13115686..13123866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026315189.2 → XP_026170974.1  sphingomyelin synthase-related protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3SIK7
    Conserved Domains (2) summary
    cd09515
    Location:6 → 75
    SAM_SGMS1-like; SAM domain of sphingomyelin synthase related subfamily
    pfam14360
    Location:285 → 358
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_026315186.2 → XP_026170971.1  sphingomyelin synthase-related protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3SIK7
    Conserved Domains (2) summary
    cd09515
    Location:18 → 87
    SAM_SGMS1-like; SAM domain of sphingomyelin synthase related subfamily
    pfam14360
    Location:297 → 370
    PAP2_C; PAP2 superfamily C-terminal

  3. XM_026315188.2 → XP_026170973.1  sphingomyelin synthase-related protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3SIK7
    Related
    ENSMAMP00000025225.2, ENSMAMT00000025875.2
    Conserved Domains (2) summary
    cd09515
    Location:6 → 75
    SAM_SGMS1-like; SAM domain of sphingomyelin synthase related subfamily
    pfam14360
    Location:285 → 358
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
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