U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pdzrn3b PDZ domain containing RING finger 3b [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113130950, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
pdzrn3b
Gene description
PDZ domain containing RING finger 3b
See related
Ensembl:ENSMAMG00000023436
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Also known as
pdzrn3
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 5 NC_046637.1 (19683874..19771473)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535886.1 (22979605..23067204, complement)

Chromosome 5 - NC_046637.1Genomic Context describing neighboring genes Neighboring gene cell adhesion molecule L1-like b Neighboring gene contactin 3b Neighboring gene protein phosphatase 4, regulatory subunit 2b Neighboring gene glucoside xylosyltransferase 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuromuscular junction development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase PDZRN3
Names
PDZ domain containing ring finger 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046637.1 Reference fMasArm1.2 Primary Assembly

    Range
    19683874..19771473
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026307955.1 → XP_026163740.1  E3 ubiquitin-protein ligase PDZRN3 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3N4U6, A0A7N8YAD3
    Related
    ENSMAMP00000034893.1, ENSMAMT00000035790.2
    Conserved Domains (3) summary
    smart00228
    Location:243 → 335
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:419 → 500
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd16718
    Location:17 → 58
    RING-HC_LNX3; RING finger, HC subclass, found in ligand of numb protein X 3 (LNX3)

  2. XM_026307956.1 → XP_026163741.1  E3 ubiquitin-protein ligase PDZRN3 isoform X2

    UniProtKB/TrEMBL
    A0A7N8YG07, A0A7N9AR48
    Related
    ENSMAMP00000065044.1, ENSMAMT00000054357.1
    Conserved Domains (3) summary
    smart00228
    Location:235 → 306
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:390 → 471
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd16718
    Location:17 → 58
    RING-HC_LNX3; RING finger, HC subclass, found in ligand of numb protein X 3 (LNX3)

  3. XM_026307958.1 → XP_026163743.1  E3 ubiquitin-protein ligase PDZRN3 isoform X3

    Conserved Domains (2) summary
    cd00992
    Location:139 → 220
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl00117
    Location:20 → 53
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.