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vps13c vacuolar protein sorting 13 homolog C [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113127047, updated on 15-Mar-2024

Summary

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Gene symbol
vps13c
Gene description
vacuolar protein sorting 13 homolog C
See related
Ensembl:ENSMAMG00000027820
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Orthologs
human zebrafish all
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Genomic context

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See vps13c in Genome Data Viewer
Location:
chromosome: Un
Exon count:
86
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) Unplaced Scaffold NW_022872917.1 (65961..130213, complement)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535860.1 (65961..130213, complement)

NW_022872917.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113127041 Neighboring gene EMILIN-1-like Neighboring gene chymotrypsin A-like Neighboring gene uncharacterized LOC113127044 Neighboring gene galanin receptor 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitochondrion organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein retention in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 13C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NW_022872917.1 Reference fMasArm1.2 Primary Assembly

    Range
    65961..130213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026301233.1 → XP_026157018.1  vacuolar protein sorting-associated protein 13C isoform X2

    Related
    ENSMAMT00000061494.1
    Conserved Domains (6) summary
    pfam06650
    Location:2708 → 2956
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam12624
    Location:4 → 113
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16908
    Location:142 → 371
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:3262 → 3436
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:575 → 798
    VPS13_mid_rpt; Repeating coiled region of VPS13
    cl25572
    Location:3123 → 3552
    VPS13; Vacuolar sorting-associated protein 13, N-terminal

  2. XM_026301232.1 → XP_026157017.1  vacuolar protein sorting-associated protein 13C isoform X1

    Conserved Domains (6) summary
    pfam06650
    Location:2720 → 2968
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam12624
    Location:4 → 113
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16908
    Location:142 → 371
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:3274 → 3448
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:575 → 798
    VPS13_mid_rpt; Repeating coiled region of VPS13
    cl25572
    Location:3135 → 3564
    VPS13; Vacuolar sorting-associated protein 13, N-terminal

  3. XM_026301234.1 → XP_026157019.1  vacuolar protein sorting-associated protein 13C isoform X3

    Conserved Domains (6) summary
    pfam06650
    Location:2720 → 2968
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam12624
    Location:4 → 113
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16908
    Location:142 → 371
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:3274 → 3448
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:575 → 798
    VPS13_mid_rpt; Repeating coiled region of VPS13
    cl25572
    Location:3135 → 3564
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
Nucleotide Protein
Heading Accession and Version

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