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tcf4 transcription factor 4 [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113124195, updated on 14-Dec-2023

Summary

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Gene symbol
tcf4
Gene description
transcription factor 4
See related
Ensembl:ENSMAMG00000022848
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
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Genomic context

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See tcf4 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
23
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 12 NC_046644.1 (4368970..4584163)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535968.1 (4368970..4584159)

Chromosome 12 - NC_046644.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113124910 Neighboring gene ATPase phospholipid transporting 8B1 Neighboring gene cingulin-like protein 1 Neighboring gene RAB27B, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046644.1 Reference fMasArm1.2 Primary Assembly

    Range
    4368970..4584163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026296705.2 → XP_026152490.1  transcription factor 4 isoform X4

    UniProtKB/TrEMBL
    A0A3Q3N206
    Conserved Domains (1) summary
    smart00353
    Location:615 → 668
    HLH; helix loop helix domain

  2. XM_026296699.2 → XP_026152484.1  transcription factor 4 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3N206
    Conserved Domains (1) summary
    smart00353
    Location:615 → 668
    HLH; helix loop helix domain

  3. XM_026296704.2 → XP_026152489.1  transcription factor 4 isoform X3

    UniProtKB/TrEMBL
    A0A3Q3N206
    Conserved Domains (2) summary
    smart00353
    Location:611 → 664
    HLH; helix loop helix domain
    cl00388
    Location:552 → 646
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold

  4. XM_026296708.2 → XP_026152493.1  transcription factor 4 isoform X7

    UniProtKB/TrEMBL
    A0A3Q3N206
    Related
    ENSMAMP00000040476.1, ENSMAMT00000063613.1
    Conserved Domains (2) summary
    smart00353
    Location:586 → 639
    HLH; helix loop helix domain
    cl00388
    Location:527 → 621
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold

  5. XM_026296701.1 → XP_026152486.1  transcription factor 4 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3N206
    Conserved Domains (1) summary
    smart00353
    Location:614 → 667
    HLH; helix loop helix domain

  6. XM_026296706.1 → XP_026152491.1  transcription factor 4 isoform X5

    UniProtKB/TrEMBL
    A0A3Q3N206
    Related
    ENSMAMP00000033988.1, ENSMAMT00000034854.2
    Conserved Domains (1) summary
    smart00353
    Location:591 → 644
    HLH; helix loop helix domain

  7. XM_026296707.1 → XP_026152492.1  transcription factor 4 isoform X6

    UniProtKB/TrEMBL
    A0A3Q3N206
    Related
    ENSMAMP00000036284.1, ENSMAMT00000060113.1
    Conserved Domains (1) summary
    smart00353
    Location:590 → 643
    HLH; helix loop helix domain

  8. XM_026296700.1 → XP_026152485.1  transcription factor 4 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3N206
    Conserved Domains (1) summary
    smart00353
    Location:615 → 668
    HLH; helix loop helix domain

  9. XM_026296711.1 → XP_026152496.1  transcription factor 4 isoform X10

    UniProtKB/TrEMBL
    A0A3Q3N206
    Conserved Domains (2) summary
    smart00353
    Location:586 → 639
    HLH; helix loop helix domain
    cl00388
    Location:527 → 621
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold

  10. XM_026296709.1 → XP_026152494.1  transcription factor 4 isoform X8

    UniProtKB/TrEMBL
    A0A3Q3N206
    Conserved Domains (1) summary
    smart00353
    Location:554 → 607
    HLH; helix loop helix domain

  11. XM_026296710.1 → XP_026152495.1  transcription factor 4 isoform X9

    UniProtKB/TrEMBL
    A0A3Q3N206
    Related
    ENSMAMP00000055169.1, ENSMAMT00000043683.1
    Conserved Domains (1) summary
    smart00353
    Location:533 → 586
    HLH; helix loop helix domain

  12. XM_026296712.2 → XP_026152497.1  transcription factor 4 isoform X11

    UniProtKB/TrEMBL
    A0A7N8Y6T6
    Related
    ENSMAMP00000060609.1, ENSMAMT00000065935.1
    Conserved Domains (1) summary
    smart00353
    Location:430 → 483
    HLH; helix loop helix domain

  13. XM_026296713.2 → XP_026152498.1  transcription factor 4 isoform X12

    UniProtKB/TrEMBL
    A0A7N8Y6T6
    Conserved Domains (2) summary
    smart00353
    Location:426 → 479
    HLH; helix loop helix domain
    cl00388
    Location:367 → 461
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
Nucleotide Protein
Heading Accession and Version

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