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lix1 limb and CNS expressed 1 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113033653, updated on 21-Dec-2023

Summary

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Gene symbol
lix1
Gene description
limb and CNS expressed 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
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Genomic context

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Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 12 NC_039313.1 (19202917..19207950, complement)

Chromosome 12 - NC_039313.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B5 Neighboring gene ectopic P-granules autophagy protein 5 homolog (C. elegans) Neighboring gene RIO kinase 2 (yeast) Neighboring gene repulsive guidance molecule BMP co-receptor b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039313.1 Chromosome 12 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein limb expression 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039313.1 Reference fAstCal1.2 Primary Assembly

    Range
    19202917..19207950 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026187668.1 → XP_026043453.1  protein limb expression 1 homolog

    UniProtKB/TrEMBL
    A0A3P8NH03
    Conserved Domains (1) summary
    pfam14954
    Location:15 → 267
    LIX1; Limb expression 1
Nucleotide Protein
Heading Accession and Version

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