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col28a1b collagen, type XXVIII, alpha 1b [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113032272, updated on 15-Mar-2024

Summary

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Gene symbol
col28a1b
Gene description
collagen, type XXVIII, alpha 1b
See related
Ensembl:ENSACLG00000007186
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Also known as
col28a1
Orthologs
zebrafish all
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Genomic context

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See col28a1b in Genome Data Viewer
Location:
chromosome: 11
Exon count:
36
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 11 NC_039312.1 (31520572..31547629)

Chromosome 11 - NC_039312.1Genomic Context describing neighboring genes Neighboring gene islet cell autoantigen 1 Neighboring gene glucocorticoid-induced transcript 1 protein-like Neighboring gene missing oocyte, meiosis regulator, homolog (Drosophila) Neighboring gene uncharacterized LOC113032274 Neighboring gene protachykinin-like Neighboring gene septin 7b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039312.1 Chromosome 11 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(XXVIII) chain
Names
collagen type XXVIII alpha 1 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039312.1 Reference fAstCal1.2 Primary Assembly

    Range
    31520572..31547629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026185088.1 → XP_026040873.1  collagen alpha-1(XXVIII) chain isoform X1

    UniProtKB/TrEMBL
    A0A3P8P0H4, A0A3P8P0N7
    Related
    ENSACLP00000010554.1, ENSACLT00000010805.1

  2. XM_026185087.1 → XP_026040872.1  collagen alpha-1(XXVIII) chain isoform X1

    UniProtKB/TrEMBL
    A0A3P8P0H4, A0A3P8P0N7
    Related
    ENSACLP00000010511.1, ENSACLT00000010762.1

  3. XM_026185089.1 → XP_026040874.1  collagen alpha-1(XXVIII) chain isoform X2

    UniProtKB/TrEMBL
    A0A3P8P0N7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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