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rbm41 RNA binding motif protein 41 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113030910, updated on 15-Mar-2024

Summary

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Gene symbol
rbm41
Gene description
RNA binding motif protein 41
See related
Ensembl:ENSACLG00000024125
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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See rbm41 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 10 NC_039311.1 (28754253..28765250, complement)

Chromosome 10 - NC_039311.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113030663 Neighboring gene CAP-GLY domain containing linker protein 2 Neighboring gene claudin 2 Neighboring gene Kruppel-like factor 8 Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene Kruppel-like factor 5 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039311.1 Chromosome 10 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U12 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA intronic binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 41

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039311.1 Reference fAstCal1.2 Primary Assembly

    Range
    28754253..28765250 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026182702.1 → XP_026038487.1  RNA-binding protein 41

    UniProtKB/TrEMBL
    A0A3P8R2X2
    Related
    ENSACLP00000035616.1, ENSACLT00000036453.1
    Conserved Domains (2) summary
    cd12239
    Location:349 → 426
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins
    cl27702
    Location:146 → 277
    COG3942; Surface antigen [Cell wall/membrane/envelope biogenesis]

RNA

  1. XR_003273664.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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