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gtf2ird1 GTF2I repeat domain containing 1 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113030662, updated on 15-Mar-2024

Summary

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Gene symbol
gtf2ird1
Gene description
GTF2I repeat domain containing 1
See related
Ensembl:ENSACLG00000023983
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 10
Exon count:
27
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 10 NC_039311.1 (28637804..28682946, complement)

Chromosome 10 - NC_039311.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113030652 Neighboring gene uncharacterized LOC113030653 Neighboring gene deltex 2, E3 ubiquitin ligase Neighboring gene uncharacterized LOC113030663 Neighboring gene CAP-GLY domain containing linker protein 2 Neighboring gene claudin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039311.1 Chromosome 10 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription factor II-I repeat domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039311.1 Reference fAstCal1.2 Primary Assembly

    Range
    28637804..28682946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026182307.1 → XP_026038092.1  general transcription factor II-I repeat domain-containing protein 1 isoform X3

  2. XM_026182306.1 → XP_026038091.1  general transcription factor II-I repeat domain-containing protein 1 isoform X2

    Conserved Domains (1) summary
    pfam02946
    Location:136 → 208
    GTF2I; GTF2I-like repeat

  3. XM_026182305.1 → XP_026038090.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3P8R2S7
    Related
    ENSACLP00000035397.1, ENSACLT00000036229.1
    Conserved Domains (1) summary
    pfam02946
    Location:136 → 208
    GTF2I; GTF2I-like repeat
Nucleotide Protein
Heading Accession and Version

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