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boc BOC cell adhesion associated, oncogene regulated [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113029013, updated on 15-Mar-2024

Summary

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Gene symbol
boc
Gene description
BOC cell adhesion associated, oncogene regulated
See related
Ensembl:ENSACLG00000026731
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 9 NC_039310.1 (17555946..17579951)

Chromosome 9 - NC_039310.1Genomic Context describing neighboring genes Neighboring gene shisa family member 2 Neighboring gene spindle and centriole associated protein 1 Neighboring gene upstream transcription factor family member 3 Neighboring gene N-alpha-acetyltransferase 50, NatE catalytic subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039310.1 Chromosome 9 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
brother of CDO

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039310.1 Reference fAstCal1.2 Primary Assembly

    Range
    17555946..17579951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026179581.1 → XP_026035366.1  brother of CDO isoform X2

  2. XM_026179582.1 → XP_026035367.1  brother of CDO isoform X3

  3. XM_026179580.1 → XP_026035365.1  brother of CDO isoform X1

  4. XM_026179583.1 → XP_026035368.1  brother of CDO isoform X4

    Related
    ENSACLP00000039639.1, ENSACLT00000040579.1
    Conserved Domains (6) summary
    smart00409
    Location:147 → 226
    IG; Immunoglobulin
    cd00063
    Location:597 → 687
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:335 → 419
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:491 → 558
    fn3; Fibronectin type III domain
    pfam13927
    Location:50 → 121
    Ig_3; Immunoglobulin domain
    cl11960
    Location:249 → 324
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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