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trim9 tripartite motif containing 9 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113011772, updated on 15-Mar-2024

Summary

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Gene symbol
trim9
Gene description
tripartite motif containing 9
See related
Ensembl:ENSACLG00000002349
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 19 NC_039320.1 (16051080..16093352, complement)

Chromosome 19 - NC_039320.1Genomic Context describing neighboring genes Neighboring gene abhydrolase domain containing 12B Neighboring gene phosphorylase, glycogen, liver Neighboring gene thioredoxin-related transmembrane protein 1 Neighboring gene FERM domain containing 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039320.1 Chromosome 19 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039320.1 Reference fAstCal1.2 Primary Assembly

    Range
    16051080..16093352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026151509.1 → XP_026007294.1  E3 ubiquitin-protein ligase TRIM9 isoform X6

    Conserved Domains (5) summary
    smart00502
    Location:277 → 403
    BBC; B-Box C-terminal domain
    smart00336
    Location:233 → 270
    BBOX; B-Box-type zinc finger
    cd00063
    Location:441 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:531 → 682
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  2. XM_026151508.1 → XP_026007293.1  E3 ubiquitin-protein ligase TRIM9 isoform X5

    Conserved Domains (5) summary
    smart00502
    Location:277 → 403
    BBC; B-Box C-terminal domain
    smart00336
    Location:233 → 270
    BBOX; B-Box-type zinc finger
    cd00063
    Location:441 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:548 → 695
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  3. XM_026151507.1 → XP_026007292.1  E3 ubiquitin-protein ligase TRIM9 isoform X4

  4. XM_026151506.1 → XP_026007291.1  E3 ubiquitin-protein ligase TRIM9 isoform X3

    UniProtKB/TrEMBL
    A0A3P8NFB3
    Related
    ENSACLP00000003475.1, ENSACLT00000003554.1
    Conserved Domains (5) summary
    smart00502
    Location:277 → 403
    BBC; B-Box C-terminal domain
    smart00336
    Location:233 → 270
    BBOX; B-Box-type zinc finger
    cd00063
    Location:441 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:531 → 700
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  5. XM_026151505.1 → XP_026007290.1  E3 ubiquitin-protein ligase TRIM9 isoform X2

    Conserved Domains (5) summary
    smart00502
    Location:277 → 403
    BBC; B-Box C-terminal domain
    smart00336
    Location:233 → 270
    BBOX; B-Box-type zinc finger
    cd00063
    Location:441 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:542 → 712
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  6. XM_026151504.1 → XP_026007289.1  E3 ubiquitin-protein ligase TRIM9 isoform X1

    Conserved Domains (5) summary
    smart00502
    Location:277 → 403
    BBC; B-Box C-terminal domain
    smart00336
    Location:233 → 270
    BBOX; B-Box-type zinc finger
    cd00063
    Location:441 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:548 → 713
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  7. XM_026151510.1 → XP_026007295.1  E3 ubiquitin-protein ligase TRIM9 isoform X7

Nucleotide Protein
Heading Accession and Version

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