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nxf1a nuclear RNA export factor 1a [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113007261, updated on 15-Mar-2024

Summary

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Gene symbol
nxf1a
Gene description
nuclear RNA export factor 1a
See related
Ensembl:ENSACLG00000017015
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Also known as
nxf1; zgc:153681
Orthologs
zebrafish all
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Genomic context

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See nxf1a in Genome Data Viewer
Location:
chromosome: 2
Exon count:
24
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 2 NC_039303.1 (32946660..32959438)

Chromosome 2 - NC_039303.1Genomic Context describing neighboring genes Neighboring gene seipin-like Neighboring gene inositol-trisphosphate 3-kinase A-like Neighboring gene autophagy related 2A Neighboring gene tRNA methyltransferase activator subunit 11-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039303.1 Chromosome 2 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear RNA export factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039303.1 Reference fAstCal1.2 Primary Assembly

    Range
    32946660..32959438
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026143659.1 → XP_025999444.1  nuclear RNA export factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A3P8Q760
    Conserved Domains (6) summary
    smart00804
    Location:596 → 658
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:262 → 304
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:155 → 235
    Tap-RNA_bind; Tap, RNA-binding
    pfam12799
    Location:303 → 344
    LRR_4; Leucine Rich repeats (2 copies)
    cd21340
    Location:265 → 358
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl09109
    Location:428 → 576
    NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...

  2. XM_026143665.1 → XP_025999450.1  nuclear RNA export factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A3P8Q760
    Conserved Domains (6) summary
    smart00804
    Location:576 → 638
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:242 → 284
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:135 → 215
    Tap-RNA_bind; Tap, RNA-binding
    pfam12799
    Location:283 → 324
    LRR_4; Leucine Rich repeats (2 copies)
    cd21340
    Location:245 → 338
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl09109
    Location:408 → 556
    NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...

  3. XM_026143679.1 → XP_025999464.1  nuclear RNA export factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A3P8Q760
    Related
    ENSACLP00000025255.1, ENSACLT00000025861.1
    Conserved Domains (6) summary
    smart00804
    Location:573 → 635
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:239 → 281
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:132 → 212
    Tap-RNA_bind; Tap, RNA-binding
    pfam12799
    Location:280 → 321
    LRR_4; Leucine Rich repeats (2 copies)
    cd21340
    Location:242 → 335
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl09109
    Location:405 → 555
    NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...

  4. XM_026143670.1 → XP_025999455.1  nuclear RNA export factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A3P8Q760
    Related
    ENSACLP00000025270.1, ENSACLT00000025876.1
    Conserved Domains (6) summary
    smart00804
    Location:567 → 629
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:233 → 275
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:126 → 206
    Tap-RNA_bind; Tap, RNA-binding
    pfam12799
    Location:274 → 315
    LRR_4; Leucine Rich repeats (2 copies)
    cd21340
    Location:236 → 329
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl09109
    Location:399 → 549
    NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...
Nucleotide Protein
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