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LOC112989436 semaphorin-3F [ Dromaius novaehollandiae (emu) ]

Gene ID: 112989436, updated on 19-Apr-2024

Summary

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Gene symbol
LOC112989436
Gene description
semaphorin-3F
See related
Ensembl:ENSDNVG00000002279
Gene type
protein coding
RefSeq status
MODEL
Organism
Dromaius novaehollandiae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius
Also known as
SEMA3F
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Genomic context

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Location:
chromosome: 12
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_04 current bDroNov1.hap1 (GCF_036370855.1) 12 NC_088109.1 (570743..610087, complement)
100 previous assembly droNov1 (GCF_003342905.1) Unplaced Scaffold NW_020453451.1 (361061..400425)

Chromosome 12 - NC_088109.1Genomic Context describing neighboring genes Neighboring gene G protein subunit alpha i2 Neighboring gene G protein subunit alpha transducin 1 Neighboring gene RNA binding motif protein 5 Neighboring gene ribosomal RNA processing 9, U3 small nucleolar RNA binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-3F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036370855.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDroNov1.hap1

Genomic

  1. NC_088109.1 Reference bDroNov1.hap1

    Range
    570743..610087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026110593.2 → XP_025966378.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    A0A8C4J8E4
    Conserved Domains (3) summary
    cd05871
    Location:608 → 698
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    cd11254
    Location:48 → 547
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:546 → 573
    PSI; domain found in Plexins, Semaphorins and Integrins

  2. XM_026110595.2 → XP_025966380.1  semaphorin-3F isoform X2

    UniProtKB/TrEMBL
    A0A8C4J7J8
    Related
    ENSDNVP00000003222.1
    Conserved Domains (3) summary
    cd05871
    Location:578 → 668
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    cd11254
    Location:48 → 517
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:516 → 543
    PSI; domain found in Plexins, Semaphorins and Integrins

  3. XM_026110592.2 → XP_025966377.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    A0A8C4J8E4
    Related
    ENSDNVP00000003209.1
    Conserved Domains (3) summary
    cd05871
    Location:608 → 698
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    cd11254
    Location:48 → 547
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:546 → 573
    PSI; domain found in Plexins, Semaphorins and Integrins
Nucleotide Protein
Heading Accession and Version

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