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IFT172 intraflagellar transport 172 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112977570, updated on 15-Mar-2024

Summary

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Gene symbol
IFT172
Gene description
intraflagellar transport 172
See related
Ensembl:ENSARWG00000001950
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
46
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020451146.1 (170956..217579, complement)

NW_020451146.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor binding protein 1 Neighboring gene keratinocyte associated protein 3 Neighboring gene low density lipoprotein receptor adapter protein 1-like Neighboring gene fibronectin type III domain containing 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020451146 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle B IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 172 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020451146.1 Reference aptRow1

    Range
    170956..217579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026090063.1 → XP_025945848.1  intraflagellar transport protein 172 homolog

    Related
    ENSARWP00000002736.1, ENSARWT00000003190.1
    Conserved Domains (5) summary
    cd15832
    Location:741 → 795
    SNAP; TPR repeat [structural motif]
    sd00039
    Location:1 → 40
    7WD40; WD40 repeat [structural motif]
    cl24038
    Location:741 → 926
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
    cl25539
    Location:2 → 247
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl26910
    Location:531 → 764
    HemY_N; HemY protein N-terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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