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RREB1 ras responsive element binding protein 1 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112974172, updated on 15-Mar-2024

Summary

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Gene symbol
RREB1
Gene description
ras responsive element binding protein 1
See related
Ensembl:ENSARWG00000016965
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020450867.1 (415350..543114)

NW_020450867.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112974176 Neighboring gene uncharacterized LOC112974177 Neighboring gene uncharacterized LOC112974179 Neighboring gene uncharacterized LOC112974173

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020450867 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-responsive element-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020450867.1 Reference aptRow1

    Range
    415350..543114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026082855.1 → XP_025938640.1  ras-responsive element-binding protein 1 isoform X3

    Related
    ENSARWP00000024899.1, ENSARWT00000028209.1
    Conserved Domains (4) summary
    sd00017
    Location:49 → 69
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1356 → 1376
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1503 → 1525
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:1489 → 1513
    zf-H2C2_2; Zinc-finger double domain

  2. XM_026082856.1 → XP_025938641.1  ras-responsive element-binding protein 1 isoform X3

    Conserved Domains (4) summary
    sd00017
    Location:49 → 69
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1356 → 1376
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1503 → 1525
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:1489 → 1513
    zf-H2C2_2; Zinc-finger double domain

  3. XM_026082858.1 → XP_025938643.1  ras-responsive element-binding protein 1 isoform X5

    Conserved Domains (4) summary
    COG5189
    Location:71 → 214
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:137 → 157
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:180 → 205
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:739 → 763
    zf-H2C2_5; C2H2-type zinc-finger domain

  4. XM_026082859.1 → XP_025938644.1  ras-responsive element-binding protein 1 isoform X6

    Conserved Domains (5) summary
    COG5189
    Location:71 → 214
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:137 → 157
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:166 → 188
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:180 → 205
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:739 → 763
    zf-H2C2_5; C2H2-type zinc-finger domain

  5. XM_026082857.1 → XP_025938642.1  ras-responsive element-binding protein 1 isoform X4

    Conserved Domains (3) summary
    sd00017
    Location:137 → 157
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1499 → 1521
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:1485 → 1509
    zf-H2C2_2; Zinc-finger double domain

  6. XM_026082853.1 → XP_025938638.1  ras-responsive element-binding protein 1 isoform X1

    Conserved Domains (4) summary
    sd00017
    Location:137 → 157
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1444 → 1464
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1591 → 1613
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:1577 → 1601
    zf-H2C2_2; Zinc-finger double domain

  7. XM_026082854.1 → XP_025938639.1  ras-responsive element-binding protein 1 isoform X2

    Conserved Domains (5) summary
    COG5048
    Location:49 → 226
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:137 → 157
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1389 → 1409
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1536 → 1558
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:1522 → 1546
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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