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SYNE3 spectrin repeat containing nuclear envelope family member 3 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112972619, updated on 15-Mar-2024

Summary

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Gene symbol
SYNE3
Gene description
spectrin repeat containing nuclear envelope family member 3
See related
Ensembl:ENSARWG00000017242
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020450760.1 (5787292..5860873)

NW_020450760.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112972622 Neighboring gene small Cajal body-specific RNA 13 Neighboring gene glutaredoxin 5 Neighboring gene calmin Neighboring gene dicer 1, ribonuclease III

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020450760 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of meiotic nuclear membrane microtubule tethering complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nesprin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020450760.1 Reference aptRow1

    Range
    5787292..5860873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026079372.1 → XP_025935157.1  nesprin-3 isoform X1

    Conserved Domains (1) summary
    cl25732
    Location:200 → 737
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_026079371.1 → XP_025935156.1  nesprin-3 isoform X1

    Conserved Domains (1) summary
    cl25732
    Location:200 → 737
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_026079375.1 → XP_025935160.1  nesprin-3 isoform X1

    Conserved Domains (1) summary
    cl25732
    Location:200 → 737
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_026079373.1 → XP_025935158.1  nesprin-3 isoform X1

    Conserved Domains (1) summary
    cl25732
    Location:200 → 737
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_026079376.1 → XP_025935161.1  nesprin-3 isoform X1

    Conserved Domains (1) summary
    cl25732
    Location:200 → 737
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_026079377.1 → XP_025935162.1  nesprin-3 isoform X2

    Related
    ENSARWP00000025370.1, ENSARWT00000028729.1
    Conserved Domains (2) summary
    pfam10541
    Location:929 → 956
    KASH; Nuclear envelope localization domain
    cl25732
    Location:200 → 737
    SMC_N; RecF/RecN/SMC N terminal domain

  7. XM_026079378.1 → XP_025935163.1  nesprin-3 isoform X3

    Conserved Domains (1) summary
    cl25732
    Location:200 → 669
    SMC_N; RecF/RecN/SMC N terminal domain

  8. XM_026079379.1 → XP_025935164.1  nesprin-3 isoform X4

    Conserved Domains (1) summary
    cl25732
    Location:200 → 669
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_026079380.1 → XP_025935165.1  nesprin-3 isoform X5

    Conserved Domains (1) summary
    cl25732
    Location:200 → 669
    SMC_N; RecF/RecN/SMC N terminal domain

  10. XM_026079381.1 → XP_025935166.1  nesprin-3 isoform X6

    Conserved Domains (1) summary
    cl25732
    Location:200 → 669
    SMC_N; RecF/RecN/SMC N terminal domain

RNA

  1. XR_003255733.1 RNA Sequence

  2. XR_003255731.1 RNA Sequence

  3. XR_003255732.1 RNA Sequence

Nucleotide Protein
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