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TNRC6C trinucleotide repeat containing adaptor 6C [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112967414, updated on 15-Mar-2024

Summary

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Gene symbol
TNRC6C
Gene description
trinucleotide repeat containing adaptor 6C
See related
Ensembl:ENSARWG00000002561
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020449141.1 (248959..339833, complement)

NW_020449141.1Genomic Context describing neighboring genes Neighboring gene SEC14 like lipid binding 1 Neighboring gene GTP-binding protein Rhes-like Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene septin 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020449141 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trinucleotide repeat-containing gene 6C protein
Names
trinucleotide repeat containing 6C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020449141.1 Reference aptRow1

    Range
    248959..339833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026068553.1 → XP_025924338.1  trinucleotide repeat-containing gene 6C protein isoform X7

    Conserved Domains (6) summary
    cd12713
    Location:1502 → 1584
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:932 → 969
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam09606
    Location:175 → 338
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam10427
    Location:819 → 935
    Ago_hook; Argonaute hook
    pfam12938
    Location:1012 → 1238
    M_domain; M domain of GW182
    pfam16608
    Location:1247 → 1501
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  2. XM_026068550.1 → XP_025924335.1  trinucleotide repeat-containing gene 6C protein isoform X5

    Conserved Domains (6) summary
    cd12713
    Location:1541 → 1623
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:932 → 969
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam09606
    Location:175 → 338
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam10427
    Location:819 → 935
    Ago_hook; Argonaute hook
    pfam12938
    Location:1012 → 1238
    M_domain; M domain of GW182
    pfam16608
    Location:1247 → 1540
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  3. XM_026068548.1 → XP_025924333.1  trinucleotide repeat-containing gene 6C protein isoform X5

    Conserved Domains (6) summary
    cd12713
    Location:1541 → 1623
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:932 → 969
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam09606
    Location:175 → 338
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam10427
    Location:819 → 935
    Ago_hook; Argonaute hook
    pfam12938
    Location:1012 → 1238
    M_domain; M domain of GW182
    pfam16608
    Location:1247 → 1540
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  4. XM_026068545.1 → XP_025924330.1  trinucleotide repeat-containing gene 6C protein isoform X3

    Related
    ENSARWP00000003415.1, ENSARWT00000003979.1
    Conserved Domains (6) summary
    cd12713
    Location:1583 → 1665
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1013 → 1050
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam09606
    Location:256 → 419
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam10427
    Location:900 → 1016
    Ago_hook; Argonaute hook
    pfam12938
    Location:1093 → 1319
    M_domain; M domain of GW182
    pfam16608
    Location:1328 → 1582
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  5. XM_026068544.1 → XP_025924329.1  trinucleotide repeat-containing gene 6C protein isoform X2

    Related
    ENSARWP00000003413.1, ENSARWT00000003977.1
    Conserved Domains (6) summary
    cd12713
    Location:1621 → 1703
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1012 → 1049
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam09606
    Location:256 → 419
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam10427
    Location:899 → 1015
    Ago_hook; Argonaute hook
    pfam12938
    Location:1092 → 1318
    M_domain; M domain of GW182
    pfam16608
    Location:1327 → 1620
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  6. XM_026068546.1 → XP_025924331.1  trinucleotide repeat-containing gene 6C protein isoform X4

    Related
    ENSARWP00000003417.1, ENSARWT00000003981.1
    Conserved Domains (6) summary
    cd12713
    Location:1572 → 1654
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1013 → 1050
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam09606
    Location:256 → 419
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam10427
    Location:900 → 1016
    Ago_hook; Argonaute hook
    pfam12938
    Location:1095 → 1269
    M_domain; M domain of GW182
    pfam16608
    Location:1278 → 1571
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  7. XM_026068543.1 → XP_025924328.1  trinucleotide repeat-containing gene 6C protein isoform X1

    Conserved Domains (6) summary
    cd12713
    Location:1622 → 1704
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1013 → 1050
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam09606
    Location:256 → 419
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam10427
    Location:900 → 1016
    Ago_hook; Argonaute hook
    pfam12938
    Location:1093 → 1319
    M_domain; M domain of GW182
    pfam16608
    Location:1328 → 1621
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  8. XM_026068547.1 → XP_025924332.1  trinucleotide repeat-containing gene 6C protein isoform X5

    Conserved Domains (6) summary
    cd12713
    Location:1541 → 1623
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:932 → 969
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam09606
    Location:175 → 338
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam10427
    Location:819 → 935
    Ago_hook; Argonaute hook
    pfam12938
    Location:1012 → 1238
    M_domain; M domain of GW182
    pfam16608
    Location:1247 → 1540
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  9. XM_026068549.1 → XP_025924334.1  trinucleotide repeat-containing gene 6C protein isoform X5

    Conserved Domains (6) summary
    cd12713
    Location:1541 → 1623
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:932 → 969
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam09606
    Location:175 → 338
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam10427
    Location:819 → 935
    Ago_hook; Argonaute hook
    pfam12938
    Location:1012 → 1238
    M_domain; M domain of GW182
    pfam16608
    Location:1247 → 1540
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  10. XM_026068552.1 → XP_025924337.1  trinucleotide repeat-containing gene 6C protein isoform X6

    Conserved Domains (6) summary
    cd12435
    Location:1622 → 1682
    RRM_GW182_like; RNA recognition motif in the GW182 family proteins
    cd14283
    Location:1013 → 1050
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam09606
    Location:256 → 419
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam10427
    Location:900 → 1016
    Ago_hook; Argonaute hook
    pfam12938
    Location:1093 → 1319
    M_domain; M domain of GW182
    pfam16608
    Location:1328 → 1621
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
Nucleotide Protein
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