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PML PML nuclear body scaffold [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112967292, updated on 15-Mar-2024

Summary

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Gene symbol
PML
Gene description
PML nuclear body scaffold
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020449085.1 (2386165..2395589)

NW_020449085.1Genomic Context describing neighboring genes Neighboring gene protein PML-like Neighboring gene stomatin like 1 Neighboring gene immunoglobulin superfamily containing leucine rich repeat 2 Neighboring gene immunoglobulin superfamily containing leucine rich repeat

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020449085 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in PML body organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intrinsic apoptotic signaling pathway in response to DNA damage IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in PML body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PML
Names
promyelocytic leukemia

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020449085.1 Reference aptRow1

    Range
    2386165..2395589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026068355.1 → XP_025924140.1  protein PML isoform X1

    Conserved Domains (4) summary
    smart00336
    Location:103 → 133
    BBOX; B-Box-type zinc finger
    pfam12126
    Location:221 → 554
    DUF3583; Protein of unknown function (DUF3583)
    cd16579
    Location:29 → 67
    RING-HC_PML_C-V; RING finger, HC subclass, found in promyelocytic leukemia protein (PML) and similar proteins
    cl10012
    Location:592 → 735
    DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

  2. XM_026068357.1 → XP_025924142.1  protein PML isoform X2

    Conserved Domains (4) summary
    smart00336
    Location:103 → 133
    BBOX; B-Box-type zinc finger
    pfam12126
    Location:221 → 512
    DUF3583; Protein of unknown function (DUF3583)
    cd16579
    Location:29 → 67
    RING-HC_PML_C-V; RING finger, HC subclass, found in promyelocytic leukemia protein (PML) and similar proteins
    cl10012
    Location:550 → 693
    DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily
Nucleotide Protein
Heading Accession and Version

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