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PTCD3 pentatricopeptide repeat domain 3 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112965563, updated on 15-Mar-2024

Summary

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Gene symbol
PTCD3
Gene description
pentatricopeptide repeat domain 3
See related
Ensembl:ENSARWG00000012418
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See PTCD3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020448530.1 (917614..941671, complement)

NW_020448530.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L35 Neighboring gene inner membrane mitochondrial protein Neighboring gene small nucleolar RNA SNORD94 Neighboring gene RNA polymerase I subunit A Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020448530 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosomal small subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat domain-containing protein 3, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020448530.1 Reference aptRow1

    Range
    917614..941671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026064687.1 → XP_025920472.1  pentatricopeptide repeat domain-containing protein 3, mitochondrial

    Related
    ENSARWP00000018063.1, ENSARWT00000020520.1
    Conserved Domains (4) summary
    sd00004
    Location:263 → 290
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:259 → 305
    PPR_2; PPR repeat family
    cl23646
    Location:359 → 409
    PPR_3; Pentatricopeptide repeat domain
    cl25449
    Location:295 → 348
    PPR_2; PPR repeat family

RNA

  1. XR_003253338.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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