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COL12A1 collagen type XII alpha 1 chain [ Nothoprocta perdicaria ]

Gene ID: 112957591, updated on 15-Mar-2024

Summary

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Gene symbol
COL12A1
Gene description
collagen type XII alpha 1 chain
See related
Ensembl:ENSNPEG00000014213
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothoprocta perdicaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
66
Annotation release Status Assembly Chr Location
100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020456021.1 (2912742..3005181, complement)

NW_020456021.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 17 member 5 Neighboring gene CD109 molecule Neighboring gene cytochrome c oxidase subunit 7A2, mitochondrial Neighboring gene transmembrane protein 30A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020456021 Unplaced Scaffold Reference notPer1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(XII) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference notPer1

Genomic

  1. NW_020456021.1 Reference notPer1

    Range
    2912742..3005181 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026051259.1 → XP_025907044.1  collagen alpha-1(XII) chain

    UniProtKB/TrEMBL
    A0A8C6ZZ42
    Related
    ENSNPEP00000019086.1, ENSNPET00000019574.1
    Conserved Domains (6) summary
    pfam01391
    Location:2767 → 2893
    Collagen; Collagen triple helix repeat (20 copies)
    smart00060
    Location:1474 → 1543
    FN3; Fibronectin type 3 domain
    smart00210
    Location:2522 → 2714
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:2120 → 2199
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1196 → 1359
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:723 → 800
    fn3; Fibronectin type III domain
Nucleotide Protein
Heading Accession and Version

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