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COL11A1 collagen type XI alpha 1 chain [ Nothoprocta perdicaria ]

Gene ID: 112951214, updated on 15-Mar-2024

Summary

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Gene symbol
COL11A1
Gene description
collagen type XI alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothoprocta perdicaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
Orthologs
human mouse all
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Genomic context

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See COL11A1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
69
Annotation release Status Assembly Chr Location
100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020455577.1 (4989567..5120057)

NW_020455577.1Genomic Context describing neighboring genes Neighboring gene RNA binding region (RNP1, RRM) containing 3 Neighboring gene uncharacterized LOC112951242 Neighboring gene uncharacterized LOC112951126 Neighboring gene uncharacterized LOC112951124

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020455577 Unplaced Scaffold Reference notPer1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(XI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference notPer1

Genomic

  1. NW_020455577.1 Reference notPer1

    Range
    4989567..5120057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026043864.1 → XP_025899649.1  collagen alpha-1(XI) chain isoform X1

    Conserved Domains (3) summary
    pfam01391
    Location:851 → 908
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:41 → 232
    TSPN; Thrombospondin N-terminal -like domains
    pfam01410
    Location:1630 → 1856
    COLFI; Fibrillar collagen C-terminal domain

  2. XM_026043866.1 → XP_025899651.1  collagen alpha-1(XI) chain isoform X3

    Conserved Domains (3) summary
    pfam01391
    Location:802 → 859
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:41 → 232
    TSPN; Thrombospondin N-terminal -like domains
    pfam01410
    Location:1581 → 1807
    COLFI; Fibrillar collagen C-terminal domain

  3. XM_026043865.1 → XP_025899650.1  collagen alpha-1(XI) chain isoform X2

    Conserved Domains (3) summary
    pfam01391
    Location:800 → 857
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:41 → 232
    TSPN; Thrombospondin N-terminal -like domains
    pfam01410
    Location:1579 → 1805
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
Heading Accession and Version

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