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TCF3 transcription factor 3 [ Nothoprocta perdicaria ]

Gene ID: 112943905, updated on 15-Mar-2024

Summary

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Gene symbol
TCF3
Gene description
transcription factor 3
See related
Ensembl:ENSNPEG00000010027
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothoprocta perdicaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020454727.1 (135148..176399, complement)

NW_020454727.1Genomic Context describing neighboring genes Neighboring gene mex-3 RNA binding family member D Neighboring gene methyl-CpG binding domain protein 3 Neighboring gene one cut homeobox 3 Neighboring gene uncharacterized LOC112943916

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020454727 Unplaced Scaffold Reference notPer1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor E2-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference notPer1

Genomic

  1. NW_020454727.1 Reference notPer1

    Range
    135148..176399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026035204.1 → XP_025890989.1  transcription factor E2-alpha isoform X2

    Conserved Domains (2) summary
    smart00353
    Location:574 → 627
    HLH; helix loop helix domain
    cl25732
    Location:508 → 644
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_026035205.1 → XP_025890990.1  transcription factor E2-alpha isoform X3

    UniProtKB/TrEMBL
    A0A8C6ZGD7
    Conserved Domains (2) summary
    smart00353
    Location:574 → 627
    HLH; helix loop helix domain
    cl25732
    Location:508 → 644
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_026035207.1 → XP_025890992.1  transcription factor E2-alpha isoform X5

    UniProtKB/TrEMBL
    A0A8C6ZHJ0
    Related
    ENSNPEP00000013435.1, ENSNPET00000013770.1
    Conserved Domains (2) summary
    smart00353
    Location:570 → 623
    HLH; helix loop helix domain
    cl25887
    Location:484 → 589
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  4. XM_026035203.1 → XP_025890988.1  transcription factor E2-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8C6ZGD7
    Conserved Domains (2) summary
    smart00353
    Location:575 → 628
    HLH; helix loop helix domain
    cl25732
    Location:509 → 645
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_026035210.1 → XP_025890995.1  transcription factor E2-alpha isoform X8

    UniProtKB/TrEMBL
    A0A8C6ZGD7
    Conserved Domains (2) summary
    smart00353
    Location:565 → 618
    HLH; helix loop helix domain
    cl25732
    Location:509 → 635
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_026035209.1 → XP_025890994.1  transcription factor E2-alpha isoform X7

    UniProtKB/TrEMBL
    A0A8C6ZGD7
    Related
    ENSNPEP00000013437.1, ENSNPET00000013772.1
    Conserved Domains (2) summary
    smart00353
    Location:566 → 619
    HLH; helix loop helix domain
    cl26472
    Location:480 → 635
    DUF3084; Protein of unknown function (DUF3084)

  7. XM_026035208.1 → XP_025890993.1  transcription factor E2-alpha isoform X6

    UniProtKB/TrEMBL
    A0A8C6ZGD7
    Conserved Domains (1) summary
    smart00353
    Location:570 → 623
    HLH; helix loop helix domain

  8. XM_026035206.1 → XP_025890991.1  transcription factor E2-alpha isoform X4

    UniProtKB/TrEMBL
    A0A8C6ZGD7
    Conserved Domains (1) summary
    smart00353
    Location:571 → 624
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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