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SYNPO synaptopodin [ Vulpes vulpes (red fox) ]

Gene ID: 112927243, updated on 15-Mar-2024

Summary

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Gene symbol
SYNPO
Gene description
synaptopodin
See related
Ensembl:ENSVVUG00000007230
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356437.1 (39752685..39782905, complement)

NW_020356437.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112928731 Neighboring gene myozenin 3 Neighboring gene N-deacetylase and N-sulfotransferase 1 Neighboring gene ribosomal protein S14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356437 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification of dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spine apparatus assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in spine apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptopodin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356437.1 Reference VulVul2.2 Primary Assembly

    Range
    39752685..39782905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026008541.1 → XP_025864326.1  synaptopodin isoform X1

    UniProtKB/TrEMBL
    A0A3Q7TFT5
    Related
    ENSVVUP00000009775.1, ENSVVUT00000012827.1
    Conserved Domains (2) summary
    cl26247
    Location:821 → 922
    DNA_pol3_delta2; DNA polymerase III, delta subunit
    cl26464
    Location:253 → 718
    Atrophin-1; Atrophin-1 family

  2. XM_026008556.1 → XP_025864341.1  synaptopodin isoform X2

    UniProtKB/TrEMBL
    A0A3Q7SPC9
    Conserved Domains (2) summary
    cl26247
    Location:579 → 680
    DNA_pol3_delta2; DNA polymerase III, delta subunit
    cl26464
    Location:11 → 476
    Atrophin-1; Atrophin-1 family

  3. XM_026008549.1 → XP_025864334.1  synaptopodin isoform X2

    UniProtKB/TrEMBL
    A0A3Q7SPC9
    Conserved Domains (2) summary
    cl26247
    Location:579 → 680
    DNA_pol3_delta2; DNA polymerase III, delta subunit
    cl26464
    Location:11 → 476
    Atrophin-1; Atrophin-1 family
Nucleotide Protein Strain
Heading Accession and Version

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