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CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component [ Vulpes vulpes (red fox) ]

Gene ID: 112927065, updated on 15-Mar-2024

Summary

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Gene symbol
CTR9
Gene description
CTR9 homolog, Paf1/RNA polymerase II complex component
See related
Ensembl:ENSVVUG00000025690
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356505.1 (6863548..6890571, complement)

NW_020356505.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD97 Neighboring gene 60S ribosomal protein L15-like Neighboring gene eukaryotic translation initiation factor 4 gamma 2 Neighboring gene RNA-binding protein 7-like Neighboring gene inositol 1,4,5-triphosphate receptor associated 1 Neighboring gene uncharacterized LOC112927072

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356505 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase-associated protein CTR9 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356505.1 Reference VulVul2.2 Primary Assembly

    Range
    6863548..6890571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026008248.1 → XP_025864033.1  RNA polymerase-associated protein CTR9 homolog

    UniProtKB/TrEMBL
    A0A3Q7T3W2
    Related
    ENSVVUP00000035731.1, ENSVVUT00000047067.1
    Conserved Domains (4) summary
    PHA03169
    Location:983 → 1171
    PHA03169; hypothetical protein; Provisional
    sd00006
    Location:501 → 525
    TPR; TPR repeat [structural motif]
    cl25574
    Location:841 → 1106
    TOP2c; TopoisomeraseII
    cl26002
    Location:110 → 781
    TPR_11; TPR repeat
Nucleotide Protein Strain
Heading Accession and Version

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