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SNTB1 syntrophin beta 1 [ Vulpes vulpes (red fox) ]

Gene ID: 112916016, updated on 15-Mar-2024

Summary

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Gene symbol
SNTB1
Gene description
syntrophin beta 1
See related
Ensembl:ENSVVUG00000016109
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See SNTB1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356448.1 (9882159..10144349, complement)

NW_020356448.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L13 Neighboring gene MDM2 binding protein Neighboring gene uncharacterized LOC112915953 Neighboring gene uncharacterized LOC112915954 Neighboring gene synaptotagmin-17-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356448 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of dystrophin-associated glycoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1-syntrophin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356448.1 Reference VulVul2.2 Primary Assembly

    Range
    9882159..10144349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025993495.1 → XP_025849280.1  beta-1-syntrophin

    UniProtKB/TrEMBL
    A0A3Q7T351
    Related
    ENSVVUP00000021922.1, ENSVVUT00000029085.1
    Conserved Domains (3) summary
    cd00992
    Location:98 → 179
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd01258
    Location:229 → 286
    PHsplit_syntrophin; Syntrophin Split Pleckstrin homology (PH) domain
    pfam00169
    Location:310 → 369
    PH; PH domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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