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PCM1 pericentriolar material 1 [ Vulpes vulpes (red fox) ]

Gene ID: 112908919, updated on 15-Mar-2024

Summary

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Gene symbol
PCM1
Gene description
pericentriolar material 1
See related
Ensembl:ENSVVUG00000007211
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
45
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356633.1 (110173..191011, complement)

NW_020356633.1Genomic Context describing neighboring genes Neighboring gene protein FRG1 Neighboring gene uncharacterized LOC112908924 Neighboring gene N-acylsphingosine amidohydrolase 1 Neighboring gene fibrinogen like 1 Neighboring gene uncharacterized LOC112908917 Neighboring gene microtubule associated scaffold protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356633 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in centrosome cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intraciliary transport involved in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule anchoring at centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriolar satellite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pericentriolar material 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356633.1 Reference VulVul2.2 Primary Assembly

    Range
    110173..191011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025984566.1 → XP_025840351.1  pericentriolar material 1 protein isoform X17

    UniProtKB/TrEMBL
    A0A3Q7RDX5
    Conserved Domains (2) summary
    pfam15717
    Location:1323 → 1954
    PCM1_C; Pericentriolar material 1 C terminus
    cl25736
    Location:231 → 417
    DUF4175; Domain of unknown function (DUF4175)

  2. XM_025984565.1 → XP_025840350.1  pericentriolar material 1 protein isoform X16

    UniProtKB/TrEMBL
    A0A3Q7SFC7
    Conserved Domains (2) summary
    pfam15717
    Location:1324 → 1955
    PCM1_C; Pericentriolar material 1 C terminus
    cl25736
    Location:231 → 417
    DUF4175; Domain of unknown function (DUF4175)

  3. XM_025984557.1 → XP_025840342.1  pericentriolar material 1 protein isoform X8

    UniProtKB/TrEMBL
    A0A3Q7R4T5
    Conserved Domains (2) summary
    pfam15717
    Location:1398 → 2029
    PCM1_C; Pericentriolar material 1 C terminus
    cl25736
    Location:231 → 417
    DUF4175; Domain of unknown function (DUF4175)

  4. XM_025984556.1 → XP_025840341.1  pericentriolar material 1 protein isoform X7

    UniProtKB/TrEMBL
    A0A3Q7RDW5
    Conserved Domains (1) summary
    pfam15717
    Location:1428 → 2059
    PCM1_C; Pericentriolar material 1 C terminus

  5. XM_025984564.1 → XP_025840349.1  pericentriolar material 1 protein isoform X15

    UniProtKB/TrEMBL
    A0A3Q7R1Y6
    Conserved Domains (2) summary
    pfam15717
    Location:1362 → 1993
    PCM1_C; Pericentriolar material 1 C terminus
    cl25732
    Location:226 → 463
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_025984562.1 → XP_025840347.1  pericentriolar material 1 protein isoform X13

    UniProtKB/TrEMBL
    A0A3Q7R4U1
    Related
    ENSVVUP00000009841.1, ENSVVUT00000012911.1
    Conserved Domains (2) summary
    pfam15717
    Location:1417 → 2048
    PCM1_C; Pericentriolar material 1 C terminus
    cl25732
    Location:226 → 463
    SMC_N; RecF/RecN/SMC N terminal domain

  7. XM_025984563.1 → XP_025840348.1  pericentriolar material 1 protein isoform X14

    UniProtKB/TrEMBL
    A0A3Q7R478
    Conserved Domains (2) summary
    pfam15717
    Location:1363 → 1994
    PCM1_C; Pericentriolar material 1 C terminus
    cl25732
    Location:226 → 463
    SMC_N; RecF/RecN/SMC N terminal domain

  8. XM_025984555.1 → XP_025840340.1  pericentriolar material 1 protein isoform X6

    UniProtKB/TrEMBL
    A0A3Q7SFB8
    Related
    ENSVVUP00000009755.1, ENSVVUT00000012802.1
    Conserved Domains (2) summary
    pfam15717
    Location:1437 → 2068
    PCM1_C; Pericentriolar material 1 C terminus
    cl25732
    Location:226 → 463
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_025984559.1 → XP_025840344.1  pericentriolar material 1 protein isoform X10

    UniProtKB/TrEMBL
    A0A3Q7R1Y1
    Conserved Domains (1) summary
    pfam15717
    Location:1392 → 2023
    PCM1_C; Pericentriolar material 1 C terminus

  10. XM_025984554.1 → XP_025840339.1  pericentriolar material 1 protein isoform X5

    UniProtKB/TrEMBL
    A0A3Q7R1X6
    Conserved Domains (1) summary
    pfam15717
    Location:1447 → 2078
    PCM1_C; Pericentriolar material 1 C terminus

  11. XM_025984551.1 → XP_025840336.1  pericentriolar material 1 protein isoform X2

    UniProtKB/TrEMBL
    A0A3Q7RDW0
    Conserved Domains (1) summary
    pfam15717
    Location:1466 → 2097
    PCM1_C; Pericentriolar material 1 C terminus

  12. XM_025984558.1 → XP_025840343.1  pericentriolar material 1 protein isoform X9

    UniProtKB/TrEMBL
    A0A3Q7R470
    Conserved Domains (1) summary
    pfam15717
    Location:1393 → 2024
    PCM1_C; Pericentriolar material 1 C terminus

  13. XM_025984553.1 → XP_025840338.1  pericentriolar material 1 protein isoform X4

    UniProtKB/TrEMBL
    A0A3Q7R464
    Conserved Domains (1) summary
    pfam15717
    Location:1448 → 2079
    PCM1_C; Pericentriolar material 1 C terminus

  14. XM_025984552.1 → XP_025840337.1  pericentriolar material 1 protein isoform X3

    UniProtKB/TrEMBL
    A0A3Q7R4T0
    Conserved Domains (1) summary
    pfam15717
    Location:1467 → 2095
    PCM1_C; Pericentriolar material 1 C terminus

  15. XM_025984542.1 → XP_025840327.1  pericentriolar material 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q7R453
    Conserved Domains (1) summary
    pfam15717
    Location:1467 → 2098
    PCM1_C; Pericentriolar material 1 C terminus

  16. XM_025984549.1 → XP_025840334.1  pericentriolar material 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q7R453
    Conserved Domains (1) summary
    pfam15717
    Location:1467 → 2098
    PCM1_C; Pericentriolar material 1 C terminus

  17. XM_025984543.1 → XP_025840328.1  pericentriolar material 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q7R453
    Conserved Domains (1) summary
    pfam15717
    Location:1467 → 2098
    PCM1_C; Pericentriolar material 1 C terminus

  18. XM_025984545.1 → XP_025840330.1  pericentriolar material 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q7R453
    Conserved Domains (1) summary
    pfam15717
    Location:1467 → 2098
    PCM1_C; Pericentriolar material 1 C terminus

  19. XM_025984547.1 → XP_025840332.1  pericentriolar material 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q7R453
    Conserved Domains (1) summary
    pfam15717
    Location:1467 → 2098
    PCM1_C; Pericentriolar material 1 C terminus

  20. XM_025984544.1 → XP_025840329.1  pericentriolar material 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q7R453
    Conserved Domains (1) summary
    pfam15717
    Location:1467 → 2098
    PCM1_C; Pericentriolar material 1 C terminus

  21. XM_025984546.1 → XP_025840331.1  pericentriolar material 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q7R453
    Conserved Domains (1) summary
    pfam15717
    Location:1467 → 2098
    PCM1_C; Pericentriolar material 1 C terminus

  22. XM_025984548.1 → XP_025840333.1  pericentriolar material 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q7R453
    Conserved Domains (1) summary
    pfam15717
    Location:1467 → 2098
    PCM1_C; Pericentriolar material 1 C terminus

  23. XM_025984561.1 → XP_025840346.1  pericentriolar material 1 protein isoform X12

    UniProtKB/TrEMBL
    A0A3Q7RDX0
    Related
    ENSVVUP00000009867.1, ENSVVUT00000012953.1
    Conserved Domains (2) summary
    pfam15717
    Location:1378 → 2009
    PCM1_C; Pericentriolar material 1 C terminus
    cl25736
    Location:231 → 417
    DUF4175; Domain of unknown function (DUF4175)

  24. XM_025984560.1 → XP_025840345.1  pericentriolar material 1 protein isoform X11

    UniProtKB/TrEMBL
    A0A3Q7SFC2
    Conserved Domains (2) summary
    pfam15717
    Location:1379 → 2010
    PCM1_C; Pericentriolar material 1 C terminus
    cl25736
    Location:231 → 417
    DUF4175; Domain of unknown function (DUF4175)

RNA

  1. XR_003233014.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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