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PTCD2 pentatricopeptide repeat domain 2 [ Vulpes vulpes (red fox) ]

Gene ID: 112907021, updated on 15-Mar-2024

Summary

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Gene symbol
PTCD2
Gene description
pentatricopeptide repeat domain 2
See related
Ensembl:ENSVVUG00000007299
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356439.1 (37247212..37279437)

NW_020356439.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 1B-like Neighboring gene microtubule associated protein 1B Neighboring gene mitochondrial ribosomal protein S27 Neighboring gene leucine-rich repeat extensin-like protein 5 Neighboring gene zinc finger protein 366

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356439 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrion organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein 2, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356439.1 Reference VulVul2.2 Primary Assembly

    Range
    37247212..37279437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025982195.1 → XP_025837980.1  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A3Q7S9H9
    Related
    ENSVVUP00000009877.1, ENSVVUT00000012966.1
    Conserved Domains (2) summary
    sd00004
    Location:160 → 189
    PPR; PPR repeat [structural motif]
    pfam10037
    Location:131 → 349
    MRP-S27; Mitochondrial 28S ribosomal protein S27

  2. XM_025982202.1 → XP_025837987.1  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A3Q7QXS4
    Conserved Domains (2) summary
    sd00004
    Location:58 → 87
    PPR; PPR repeat [structural motif]
    pfam10037
    Location:29 → 247
    MRP-S27; Mitochondrial 28S ribosomal protein S27
Nucleotide Protein Strain
Heading Accession and Version

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