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PTCH1 patched 1 [ Puma concolor (puma) ]

Gene ID: 112868509, updated on 15-Mar-2024

Summary

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Gene symbol
PTCH1
Gene description
patched 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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See PTCH1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339908.1 (30292590..30331990, complement)

NW_020339908.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene aminopeptidase O (putative) Neighboring gene FA complementation group C Neighboring gene U6 spliceosomal RNA Neighboring gene ERCC excision repair 6 like 2 Neighboring gene U6 spliceosomal RNA Neighboring gene hydroxysteroid 17-beta dehydrogenase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020339908 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hedgehog family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hedgehog receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables smoothened binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein patched homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339908.1 Reference PumCon1.0 Primary Assembly

    Range
    30292590..30331990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025931480.1 → XP_025787265.1  protein patched homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P6IGC6
    Conserved Domains (1) summary
    TIGR00918
    Location:1 → 1055
    2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family

  2. XM_025931481.1 → XP_025787266.1  protein patched homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P6IGC2
    Conserved Domains (1) summary
    cl25655
    Location:1 → 1003
    Patched; Patched family
Nucleotide Protein
Heading Accession and Version

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