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RNF144B ring finger protein 144B [ Puma concolor (puma) ]

Gene ID: 112853423, updated on 15-Mar-2024

Summary

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Gene symbol
RNF144B
Gene description
ring finger protein 144B
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020338758.1 (20176924..20256716)

NW_020338758.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 1B Neighboring gene DEK proto-oncogene Neighboring gene transfer RNA opal suppressor (anticodon UCA) Neighboring gene tigger transposable element-derived protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020338758 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF144B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020338758.1 Reference PumCon1.0 Primary Assembly

    Range
    20176924..20256716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025916958.1 → XP_025772743.1  E3 ubiquitin-protein ligase RNF144B

    UniProtKB/TrEMBL
    A0A6P6HAI6
    Conserved Domains (4) summary
    smart00647
    Location:101 → 166
    IBR; In Between Ring fingers
    cd00162
    Location:30 → 80
    RING_Ubox; modified RING-HC finger (C4C4-type) [structural motif]
    pfam01485
    Location:190 → 225
    IBR; IBR domain, a half RING-finger domain
    cl17238
    Location:28 → 84
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_025916957.1 → XP_025772742.1  E3 ubiquitin-protein ligase RNF144B

    UniProtKB/TrEMBL
    A0A6P6HAI6
    Conserved Domains (4) summary
    smart00647
    Location:101 → 166
    IBR; In Between Ring fingers
    cd00162
    Location:30 → 80
    RING_Ubox; modified RING-HC finger (C4C4-type) [structural motif]
    pfam01485
    Location:190 → 225
    IBR; IBR domain, a half RING-finger domain
    cl17238
    Location:28 → 84
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. XM_025916959.1 → XP_025772744.1  E3 ubiquitin-protein ligase RNF144B

    UniProtKB/TrEMBL
    A0A6P6HAI6
    Conserved Domains (4) summary
    smart00647
    Location:101 → 166
    IBR; In Between Ring fingers
    cd00162
    Location:30 → 80
    RING_Ubox; modified RING-HC finger (C4C4-type) [structural motif]
    pfam01485
    Location:190 → 225
    IBR; IBR domain, a half RING-finger domain
    cl17238
    Location:28 → 84
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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