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KDM3A lysine demethylase 3A [ Callorhinus ursinus (northern fur seal) ]

Gene ID: 112821062, updated on 15-Mar-2024

Summary

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Gene symbol
KDM3A
Gene description
lysine demethylase 3A
See related
EnsemblRapid:ENSCURG00000005982
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinus ursinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Callorhinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current ASM326570v1 (GCF_003265705.1) Unplaced Scaffold NW_020312817.1 (39688053..39743436, complement)

NW_020312817.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 103 Neighboring gene 40S ribosomal protein S16 pseudogene Neighboring gene charged multivesicular body protein 3 Neighboring gene receptor accessory protein 1 Neighboring gene mitochondrial ribosomal protein L35

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020312817 Unplaced Scaffold Reference ASM326570v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinus ursinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM326570v1 Primary Assembly

Genomic

  1. NW_020312817.1 Reference ASM326570v1 Primary Assembly

    Range
    39688053..39743436 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025868248.1 → XP_025724033.1  lysine-specific demethylase 3A isoform X3

    UniProtKB/TrEMBL
    A0A3Q7NRT9
    Conserved Domains (2) summary
    smart00558
    Location:1049 → 1119
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1136 → 1249
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_025868247.1 → XP_025724032.1  lysine-specific demethylase 3A isoform X2

    UniProtKB/TrEMBL
    A0A3Q7P0U0
    Conserved Domains (2) summary
    smart00558
    Location:1050 → 1120
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1137 → 1250
    cupin_like; Conserved domain found in cupin and related proteins

  3. XM_025868246.1 → XP_025724031.1  lysine-specific demethylase 3A isoform X1

    UniProtKB/TrEMBL
    A0A3Q7Q745
    Related
    ENSCURP00000009468.1, ENSCURT00000011137.1
    Conserved Domains (3) summary
    smart00558
    Location:1065 → 1135
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam07964
    Location:749 → 937
    Red1; Rec10 / Red1
    cl21464
    Location:1152 → 1265
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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