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MID1 midline 1 [ Callorhinus ursinus (northern fur seal) ]

Gene ID: 112812778, updated on 15-Mar-2024

Summary

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Gene symbol
MID1
Gene description
midline 1
See related
EnsemblRapid:ENSCURG00000024425
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinus ursinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Callorhinus
Orthologs
human mouse all
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Genomic context

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See MID1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM326570v1 (GCF_003265705.1) Unplaced Scaffold NW_020313078.1 (36797275..36915908)

NW_020313078.1Genomic Context describing neighboring genes Neighboring gene cytochrome c-type heme lyase Neighboring gene 60S ribosomal protein L5 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC112812641 Neighboring gene chloride voltage-gated channel 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020313078 Unplaced Scaffold Reference ASM326570v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase Midline-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinus ursinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM326570v1 Primary Assembly

Genomic

  1. NW_020313078.1 Reference ASM326570v1 Primary Assembly

    Range
    36797275..36915908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025857735.1 → XP_025713520.1  E3 ubiquitin-protein ligase Midline-1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7N161
    Related
    ENSCURP00000039741.1, ENSCURT00000045252.1
    Conserved Domains (7) summary
    smart00502
    Location:219 → 344
    BBC; B-Box C-terminal domain
    cd00063
    Location:381 → 481
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12892
    Location:485 → 661
    SPRY_PRY_TRIM18; PRY/SPRY domain of TRIM18/MID1, also known as FXY or RNF59
    cd16753
    Location:8 → 61
    RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins
    cd19822
    Location:168 → 214
    Bbox2_MID1_C-I; B-box-type 2 zinc finger found in midline-1 (MID1) and similar proteins
    cd19836
    Location:115 → 164
    Bbox1_MID1_C-I; B-box-type 1 zinc finger found in midline-1 (MID1) and similar proteins
    pfam18568
    Location:323 → 374
    COS; TRIM C-terminal subgroup One Signature domain

  2. XM_025857736.1 → XP_025713521.1  E3 ubiquitin-protein ligase Midline-1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q7PCE6
    Conserved Domains (5) summary
    smart00502
    Location:182 → 306
    BBC; B-Box C-terminal domain
    smart00336
    Location:114 → 160
    BBOX; B-Box-type zinc finger
    cd00063
    Location:343 → 443
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12892
    Location:447 → 623
    SPRY_PRY_TRIM18; PRY/SPRY domain of TRIM18/MID1, also known as FXY or RNF59
    cd16753
    Location:8 → 61
    RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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