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HES4 hes family bHLH transcription factor 4 [ Callorhinus ursinus (northern fur seal) ]

Gene ID: 112812216, updated on 15-Mar-2024

Summary

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Gene symbol
HES4
Gene description
hes family bHLH transcription factor 4
See related
EnsemblRapid:ENSCURG00000022037
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinus ursinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Callorhinus
Orthologs
human all
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Genomic context

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See HES4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM326570v1 (GCF_003265705.1) Unplaced Scaffold NW_020313076.1 (115583..120518, complement)

NW_020313076.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112812217 Neighboring gene PPARGC1 and ESRR induced regulator, muscle 1 Neighboring gene ISG15 ubiquitin like modifier Neighboring gene agrin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020313076 Unplaced Scaffold Reference ASM326570v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor HES-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinus ursinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM326570v1 Primary Assembly

Genomic

  1. NW_020313076.1 Reference ASM326570v1 Primary Assembly

    Range
    115583..120518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025856916.1 → XP_025712701.1  transcription factor HES-4 isoform X4

    UniProtKB/TrEMBL
    A0A3Q7PA86
    Conserved Domains (3) summary
    cd00083
    Location:37 → 61
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    TIGR00601
    Location:2 → 156
    rad23; UV excision repair protein Rad23
    pfam07527
    Location:78 → 115
    Hairy_orange; Hairy Orange

  2. XM_025856915.1 → XP_025712700.1  transcription factor HES-4 isoform X3

    UniProtKB/TrEMBL
    A0A3Q7MZ47
    Related
    ENSCURP00000035828.1, ENSCURT00000040935.1
    Conserved Domains (2) summary
    cd00083
    Location:33 → 93
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam07527
    Location:110 → 147
    Hairy_orange; Hairy Orange

  3. XM_025856914.1 → XP_025712699.1  transcription factor HES-4 isoform X2

    UniProtKB/TrEMBL
    A0A3Q7MZI5
    Conserved Domains (2) summary
    cd00083
    Location:40 → 97
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam07527
    Location:114 → 151
    Hairy_orange; Hairy Orange

  4. XM_025856912.1 → XP_025712697.1  transcription factor HES-4 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7N1E2
    Conserved Domains (2) summary
    cd00083
    Location:63 → 120
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam07527
    Location:137 → 174
    Hairy_orange; Hairy Orange

  5. XM_025856913.1 → XP_025712698.1  transcription factor HES-4 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7N1E2
    Related
    ENSCURP00000035826.1, ENSCURT00000040933.1
    Conserved Domains (2) summary
    cd00083
    Location:63 → 120
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam07527
    Location:137 → 174
    Hairy_orange; Hairy Orange
Nucleotide Protein
Heading Accession and Version

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