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NPHP4 nephrocystin 4 [ Callorhinus ursinus (northern fur seal) ]

Gene ID: 112811849, updated on 15-Mar-2024

Summary

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Gene symbol
NPHP4
Gene description
nephrocystin 4
See related
EnsemblRapid:ENSCURG00000023368
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinus ursinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Callorhinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current ASM326570v1 (GCF_003265705.1) Unplaced Scaffold NW_020313076.1 (3807078..3918754, complement)

NW_020313076.1Genomic Context describing neighboring genes Neighboring gene adherens junctions associated protein 1 Neighboring gene uncharacterized LOC112811566 Neighboring gene potassium voltage-gated channel subfamily A regulatory beta subunit 2 Neighboring gene uncharacterized LOC112811852 Neighboring gene chromodomain helicase DNA binding protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020313076 Unplaced Scaffold Reference ASM326570v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary base IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in non-motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nephrocystin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinus ursinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM326570v1 Primary Assembly

Genomic

  1. NW_020313076.1 Reference ASM326570v1 Primary Assembly

    Range
    3807078..3918754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025856315.1 → XP_025712100.1  nephrocystin-4 isoform X3

    UniProtKB/TrEMBL
    A0A3Q7MXU0

  2. XM_025856314.1 → XP_025712099.1  nephrocystin-4 isoform X2

    UniProtKB/TrEMBL
    A0A3Q7MXU7
    Related
    ENSCURP00000038009.1, ENSCURT00000043358.1

  3. XM_025856317.1 → XP_025712102.1  nephrocystin-4 isoform X5

    UniProtKB/TrEMBL
    A0A3Q7MZJ2

  4. XM_025856316.1 → XP_025712101.1  nephrocystin-4 isoform X4

    UniProtKB/TrEMBL
    A0A3Q7P8N6

  5. XM_025856313.1 → XP_025712098.1  nephrocystin-4 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7MVL7
Nucleotide Protein
Heading Accession and Version

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