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NPNT nephronectin [ Canis lupus dingo (dingo) ]

Gene ID: 112671598, updated on 3-Apr-2024

Summary

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Gene symbol
NPNT
Gene description
nephronectin
See related
Ensembl:ENSCAFG00020009929
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 32
Exon count:
15
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 32 NC_064274.1 (26745496..26821364)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 32 Unlocalized Scaffold NW_023365232.1 (26858434..26934305)

Chromosome 32 - NC_064274.1Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 38 Neighboring gene uncharacterized LOC112671597 Neighboring gene integrator complex subunit 12 Neighboring gene glutathione S-transferase C-terminal domain containing Neighboring gene uncharacterized LOC112671602 Neighboring gene TBC1 domain containing kinase Neighboring gene aminoacyl tRNA synthetase complex interacting multifunctional protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nephronectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064274.1 Reference ASM325472v2

    Range
    26745496..26821364
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025465812.3 → XP_025321597.1  nephronectin isoform X5

    UniProtKB/TrEMBL
    A0A8C0PFG6, A0A8C0Z375, A0A8I3QG70
    Conserved Domains (5) summary
    cd06263
    Location:466 → 605
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    cd00054
    Location:137 → 169
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:217 → 249
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:198 → 220
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:266 → 301
    EGF_3; EGF domain

  2. XM_025465814.3 → XP_025321599.1  nephronectin isoform X2

    UniProtKB/TrEMBL
    A0A8C0PEX3, A0A8C0T864, A0A8I3Q0H8
    Conserved Domains (5) summary
    cd06263
    Location:435 → 574
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    cd00054
    Location:106 → 138
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:186 → 218
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:167 → 189
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:235 → 270
    EGF_3; EGF domain

  3. XM_025465813.3 → XP_025321598.1  nephronectin isoform X1

    UniProtKB/TrEMBL
    A0A8C0PEW3, A0A8C0Z375, A0A8I3SBG5
    Conserved Domains (5) summary
    cd06263
    Location:449 → 588
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    cd00054
    Location:120 → 152
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:200 → 232
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:181 → 203
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:249 → 284
    EGF_3; EGF domain

  4. XM_025465815.3 → XP_025321600.1  nephronectin isoform X3

    UniProtKB/TrEMBL
    A0A8C0K7V4, A0A8C0T9N4
    Related
    ENSCAFP00020012360.1
    Conserved Domains (5) summary
    cd06263
    Location:418 → 557
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    cd00054
    Location:89 → 121
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:169 → 201
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:150 → 172
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:218 → 253
    EGF_3; EGF domain

  5. XM_049104946.1 → XP_048960903.1  nephronectin isoform X4

Nucleotide Protein
Heading Accession and Version

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