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COL4A1 collagen type IV alpha 1 chain [ Canis lupus dingo (dingo) ]

Gene ID: 112656117, updated on 15-Mar-2024

Summary

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Gene symbol
COL4A1
Gene description
collagen type IV alpha 1 chain
See related
Ensembl:ENSCAFG00020021128
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
53
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 22 NC_064264.1 (58635695..58777346, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 22 Unlocalized Scaffold NW_023365197.1 (58814708..58906364, complement)

Chromosome 22 - NC_064264.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125753344 Neighboring gene collagen type IV alpha 2 chain Neighboring gene uncharacterized LOC112655951 Neighboring gene uncharacterized LOC112656119 Neighboring gene uncharacterized LOC125753345

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064264.1 Reference ASM325472v2

    Range
    58635695..58777346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049099369.1 → XP_048955326.1  collagen alpha-1(IV) chain isoform X2

    UniProtKB/TrEMBL
    A0A8C0PHZ8

  2. XM_049099368.1 → XP_048955325.1  collagen alpha-1(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0L4T7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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