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PPARGC1A PPARG coactivator 1 alpha [ Canis lupus dingo (dingo) ]

Gene ID: 112654092, updated on 3-Apr-2024

Summary

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Gene symbol
PPARGC1A
Gene description
PPARG coactivator 1 alpha
See related
Ensembl:ENSCAFG00020027242
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
21
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 3 NC_064245.1 (85836533..86476811)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 3 Unlocalized Scaffold NW_023365069.1 (86614082..87253227)

Chromosome 3 - NC_064245.1Genomic Context describing neighboring genes Neighboring gene superoxide dismutase 3 Neighboring gene DEAH-box helicase 15 Neighboring gene uncharacterized LOC125754898 Neighboring gene uncharacterized LOC112654094 Neighboring gene uncharacterized LOC118354353 Neighboring gene uncharacterized LOC118354354

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome proliferator-activated receptor gamma coactivator 1-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064245.1 Reference ASM325472v2

    Range
    85836533..86476811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025438411.3 → XP_025294196.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X4

    UniProtKB/TrEMBL
    A0A8C0PW93
    Conserved Domains (1) summary
    cd12623
    Location:663 → 753
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  2. XM_035714801.2 → XP_035570694.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  3. XM_049108730.1 → XP_048964687.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

  4. XM_025438406.3 → XP_025294191.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  5. XM_035714802.2 → XP_035570695.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  6. XM_025438408.3 → XP_025294193.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  7. XM_025438410.3 → XP_025294195.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X3

    UniProtKB/TrEMBL
    A0A8C0M3T2, A0A8I3NBJ6, A0A8I3RUL9, A0A8P0T369
    Related
    ENSCAFP00020035173.1
    Conserved Domains (1) summary
    cd12623
    Location:672 → 762
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  8. XM_025438409.3 → XP_025294194.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C0M294, A0A8I3NBJ6, A0A8P0T369
    Conserved Domains (1) summary
    cd12623
    Location:673 → 763
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins
Nucleotide Protein
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