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CPSF4 cleavage and polyadenylation specific factor 4 [ Canis lupus dingo (dingo) ]

Gene ID: 112646283, updated on 15-Mar-2024

Summary

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Gene symbol
CPSF4
Gene description
cleavage and polyadenylation specific factor 4
See related
Ensembl:ENSCAFG00020014462
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 6 NC_064248.1 (9957678..9978169, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 6 Unlocalized Scaffold NW_023365097.1 (10143480..10163982, complement)

Chromosome 6 - NC_064248.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118355008 Neighboring gene uncharacterized LOC112646287 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene pentatricopeptide repeat domain 1 Neighboring gene BUD31 homolog Neighboring gene PDGFA associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064248.1 Reference ASM325472v2

    Range
    9957678..9978169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025426174.3 → XP_025281959.1  cleavage and polyadenylation specificity factor subunit 4 isoform X7

    UniProtKB/TrEMBL
    A0A8C0QNM2, A0A8I3N5M4
    Conserved Domains (1) summary
    COG5084
    Location:25 → 176
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  2. XM_025426173.3 → XP_025281958.1  cleavage and polyadenylation specificity factor subunit 4 isoform X6

    UniProtKB/TrEMBL
    A0A8C0QNM2, A0A8I3N5M4
    Conserved Domains (1) summary
    COG5084
    Location:25 → 176
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  3. XM_025426168.3 → XP_025281953.1  cleavage and polyadenylation specificity factor subunit 4 isoform X2

    Conserved Domains (1) summary
    COG5084
    Location:25 → 211
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  4. XM_025426176.3 → XP_025281961.1  cleavage and polyadenylation specificity factor subunit 4 isoform X9

    UniProtKB/TrEMBL
    A0A8C0QNM2, A0A8I3N5M4
    Conserved Domains (1) summary
    COG5084
    Location:25 → 176
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  5. XM_025426175.3 → XP_025281960.1  cleavage and polyadenylation specificity factor subunit 4 isoform X8

    UniProtKB/TrEMBL
    A0A8C0QNM2, A0A8I3N5M4
    Conserved Domains (1) summary
    COG5084
    Location:25 → 176
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  6. XM_025426169.3 → XP_025281954.1  cleavage and polyadenylation specificity factor subunit 4 isoform X3

    Conserved Domains (1) summary
    COG5084
    Location:25 → 211
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  7. XM_025426172.3 → XP_025281957.1  cleavage and polyadenylation specificity factor subunit 4 isoform X5

    UniProtKB/TrEMBL
    A0A8C0QNM2, A0A8I3N5M4
    Conserved Domains (2) summary
    COG5084
    Location:25 → 176
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    COG5222
    Location:192 → 232
    COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

  8. XM_025426170.3 → XP_025281955.1  cleavage and polyadenylation specificity factor subunit 4 isoform X4

    UniProtKB/TrEMBL
    A0A8C0QNM2, A0A8I3N5M4
    Conserved Domains (2) summary
    COG5084
    Location:25 → 176
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    COG5222
    Location:193 → 233
    COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

  9. XM_025426167.3 → XP_025281952.1  cleavage and polyadenylation specificity factor subunit 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QI42, A0A8C0QJF2, A0A8I3RSW2
    Related
    ENSCAFP00020018090.1
    Conserved Domains (2) summary
    COG5084
    Location:25 → 211
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    COG5222
    Location:198 → 258
    COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

  10. XM_049110848.1 → XP_048966805.1  cleavage and polyadenylation specificity factor subunit 4 isoform X10

Nucleotide Protein
Heading Accession and Version

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