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COL9A1 collagen type IX alpha 1 chain [ Theropithecus gelada (gelada) ]

Gene ID: 112622700, updated on 15-Mar-2024

Summary

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Gene symbol
COL9A1
Gene description
collagen type IX alpha 1 chain
See related
Ensembl:ENSTGEG00000009777
Gene type
protein coding
RefSeq status
MODEL
Organism
Theropithecus gelada
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Theropithecus
Orthologs
human mouse all
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Genomic context

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See COL9A1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
39
Annotation release Status Assembly Chr Location
100 current Tgel_1.0 (GCF_003255815.1) 4 NC_037671.1 (69277452..69365243, complement)

Chromosome 4 - NC_037671.1Genomic Context describing neighboring genes Neighboring gene LMBR1 domain containing 1 Neighboring gene collagen type XIX alpha 1 chain Neighboring gene 60S ribosomal protein L37 pseudogene Neighboring gene uncharacterized LOC112622602 Neighboring gene family with sequence similarity 135 member A Neighboring gene U7 small nuclear RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037671.1 Chromosome 4 Reference Tgel_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(IX) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theropithecus gelada Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tgel_1.0 Primary Assembly

Genomic

  1. NC_037671.1 Reference Tgel_1.0 Primary Assembly

    Range
    69277452..69365243 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025382405.1 → XP_025238190.1  collagen alpha-1(IX) chain isoform X1

    UniProtKB/TrEMBL
    A0A8D2EX48
    Related
    ENSTGEP00000012004.1, ENSTGET00000014431.1
    Conserved Domains (3) summary
    pfam01391
    Location:493 → 552
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:50 → 244
    TSPN; Thrombospondin N-terminal -like domains
    pfam09606
    Location:492 → 760
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  2. XM_025382406.1 → XP_025238191.1  collagen alpha-1(IX) chain isoform X2

    UniProtKB/TrEMBL
    A0A8D2EUD4
    Related
    ENSTGEP00000012005.1, ENSTGET00000014433.1
    Conserved Domains (1) summary
    pfam01391
    Location:250 → 309
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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