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PCDH17 protocadherin 17 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112414654, updated on 15-Mar-2024

Summary

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Gene symbol
PCDH17
Gene description
protocadherin 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020175414.1 (3356804..3456937)

NW_020175414.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L31 pseudogene Neighboring gene uncharacterized LOC112414643 Neighboring gene thioredoxin reductase-like selenoprotein T Neighboring gene kinetochore-associated protein NSL1 homolog pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020175414 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020175414.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    3356804..3456937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024767215.1 → XP_024622983.1  protocadherin-17

    UniProtKB/TrEMBL
    A0A341D7F3
    Conserved Domains (2) summary
    cd11304
    Location:249 → 349
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:21 → 114
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

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