U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL11A2 collagen type XI alpha 2 chain [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112413835, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
COL11A2
Gene description
collagen type XI alpha 2 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
65
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020175393.1 (1232794..1260160, complement)

NW_020175393.1Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 1 pseudogene Neighboring gene HLA class II histocompatibility antigen, DO alpha chain-like Neighboring gene retinoid X receptor beta Neighboring gene solute carrier family 39 member 7

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_020175393 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: collagen alpha-2(XI) chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020175393.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    1232794..1260160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024765958.1 → XP_024621726.1  LOW QUALITY PROTEIN: collagen alpha-2(XI) chain

    UniProtKB/TrEMBL
    A0A0U2GT51, A0A341D3X7
    Conserved Domains (4) summary
    pfam01391
    Location:1306 → 1364
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1540 → 1735
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:32 → 213
    TSPN; Thrombospondin N-terminal -like domains
    pfam09606
    Location:416 → 718
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.