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RBM12B RNA binding motif protein 12B [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112413473, updated on 15-Mar-2024

Summary

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Gene symbol
RBM12B
Gene description
RNA binding motif protein 12B
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020175261.1 (133392..142876, complement)

NW_020175261.1Genomic Context describing neighboring genes Neighboring gene CBY1 interacting BAR domain containing 1 Neighboring gene transmembrane protein 67 Neighboring gene signal peptidase complex subunit 1-like Neighboring gene pyruvate dehydrogenase phosphatase catalytic subunit 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020175261 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 12B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020175261.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    133392..142876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024765421.1 → XP_024621189.1  RNA-binding protein 12B

    UniProtKB/TrEMBL
    A0A341D3F9
    Conserved Domains (7) summary
    cd12513
    Location:284 → 363
    RRM3_RBM12B; RNA recognition motif 3 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12746
    Location:156 → 233
    RRM2_RBM12B; RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:918 → 994
    RRM5_RBM12B; RNA recognition motif 5 in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:400 → 475
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl25751
    Location:521 → 747
    DUF4045; Domain of unknown function (DUF4045)
    cl28061
    Location:736 → 864
    RAP-1; Rhoptry-associated protein 1 (RAP-1)

  2. XM_024765422.1 → XP_024621190.1  RNA-binding protein 12B

    UniProtKB/TrEMBL
    A0A341D3F9
    Conserved Domains (7) summary
    cd12513
    Location:284 → 363
    RRM3_RBM12B; RNA recognition motif 3 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12746
    Location:156 → 233
    RRM2_RBM12B; RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:918 → 994
    RRM5_RBM12B; RNA recognition motif 5 in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:400 → 475
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl25751
    Location:521 → 747
    DUF4045; Domain of unknown function (DUF4045)
    cl28061
    Location:736 → 864
    RAP-1; Rhoptry-associated protein 1 (RAP-1)

  3. XM_024765423.1 → XP_024621191.1  RNA-binding protein 12B

    UniProtKB/TrEMBL
    A0A341D3F9
    Conserved Domains (7) summary
    cd12513
    Location:284 → 363
    RRM3_RBM12B; RNA recognition motif 3 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12746
    Location:156 → 233
    RRM2_RBM12B; RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:918 → 994
    RRM5_RBM12B; RNA recognition motif 5 in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:400 → 475
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl25751
    Location:521 → 747
    DUF4045; Domain of unknown function (DUF4045)
    cl28061
    Location:736 → 864
    RAP-1; Rhoptry-associated protein 1 (RAP-1)
Nucleotide Protein
Heading Accession and Version

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