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CTSB cathepsin B [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112410693, updated on 15-Mar-2024

Summary

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Gene symbol
CTSB
Gene description
cathepsin B
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020174929.1 (1876084..1898759)

NW_020174929.1Genomic Context describing neighboring genes Neighboring gene histidine-rich protein PFHRP-III Neighboring gene polyadenylate-binding protein 4-like Neighboring gene defensin beta 136 Neighboring gene farnesyl-diphosphate farnesyltransferase 1 Neighboring gene nei like DNA glycosylase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020174929 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cathepsin B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020174929.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    1876084..1898759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024761398.1 → XP_024617166.1  cathepsin B

    UniProtKB/TrEMBL
    A0A341CQY3
    Conserved Domains (2) summary
    cd02620
    Location:80 → 327
    Peptidase_C1A_CathepsinB; Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an ...
    pfam08127
    Location:25 → 64
    Propeptide_C1; Peptidase family C1 propeptide

  2. XM_024761399.1 → XP_024617167.1  cathepsin B

    UniProtKB/TrEMBL
    A0A341CQY3
    Conserved Domains (2) summary
    cd02620
    Location:80 → 327
    Peptidase_C1A_CathepsinB; Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an ...
    pfam08127
    Location:25 → 64
    Propeptide_C1; Peptidase family C1 propeptide
Nucleotide Protein
Heading Accession and Version

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